Commits · 784064ce3305ad229841885ed967391d0fa252d7 · Mirrors / biopet.biopet

Browse files

Jan 09, 2015
- Change to fastq reader from htsjdk · 784064ce
  Peter van 't Hof authored Jan 9, 2015
  
  784064ce
Dec 09, 2014
- Change pom version · 06536548
  Peter van 't Hof authored Dec 9, 2014
  
  06536548
- Merge branch 'release-0.2.0' into develop · b9a26ee4
  Peter van 't Hof authored Dec 9, 2014
  
  b9a26ee4
- Unmask pipelines and tools · 74efe128
  Peter van 't Hof authored Dec 9, 2014
  
  74efe128
- Change Pom to version 0.2.0 · 1572cb02
  Peter van 't Hof authored Dec 9, 2014
  
  1572cb02
- Merge branch 'master' into release-0.2.0 · 0c14ce58
  Peter van 't Hof authored Dec 9, 2014
  0c14ce58
- Merge branch 'feature-documentation' into 'release-0.2.0' · fe1d703a
  Peter van 't Hof authored Dec 9, 2014
  fe1d703a
Dec 08, 2014
- putted config in general folder · ab38bbe2
  sajvanderzeeuw authored Dec 8, 2014
  
  ab38bbe2
- Mask MergeAlleles tool · f04076fd
  Peter van 't Hof authored Dec 8, 2014
  
  f04076fd
- removed mkdocs theme and OGE from docs · 3f15ac31
  sajvanderzeeuw authored Dec 8, 2014
  
  3f15ac31
- Fix for #95 · 63a0ef68
  Peter van 't Hof authored Dec 8, 2014
  
  63a0ef68
- changes in docs format · e3ae79eb
  sajvanderzeeuw authored Dec 8, 2014
  
  e3ae79eb
Dec 05, 2014
- changes in docs format · b1deafba
  sajvanderzeeuw authored Dec 5, 2014
  
  b1deafba
- docs added · 288b6bf2
  sajvanderzeeuw authored Dec 5, 2014
  
  288b6bf2
- Added License to header of all files · b2a02952
  Peter van 't Hof authored Dec 5, 2014
  
  b2a02952
- Change Licenses · 41a81ab7
  Peter van 't Hof authored Dec 5, 2014
  
  41a81ab7
- Fix compile error · 629f1f6b
  Peter van 't Hof authored Dec 5, 2014
  
  629f1f6b
Dec 04, 2014
- Mask oncompleted pipelines · 18936b56
  Peter van 't Hof authored Dec 4, 2014
  
  18936b56
- Change pom to version 0.2.0-rc1 · 203b60cc
  Peter van 't Hof authored Dec 4, 2014
  
  203b60cc
- Merge remote-tracking branch 'remotes/origin/feature-documentation' into release-0.2.0 · a0c297b3
  Peter van 't Hof authored Dec 4, 2014
  
  a0c297b3
- added start up sage docs · 731d6089
  sajvanderzeeuw authored Dec 4, 2014
  
  731d6089
- Merge branch 'feature-genotype_filter' into 'develop' · 610e9ad5
  bow authored Dec 4, 2014
  610e9ad5
- Added Qual filter option · 4a4fa9be
  Peter van 't Hof authored Dec 4, 2014
  
  4a4fa9be
- Fix compile error · 54d50322
  Peter van 't Hof authored Dec 4, 2014
  
  54d50322
- Merge branch 'feature-prerelease_fixes' into 'develop' · 110b16b0
  Peter van 't Hof authored Dec 4, 2014
  110b16b0
- Split every filter option into functions · a5030119
  Peter van 't Hof authored Dec 4, 2014
  
  a5030119
- Added text to args · a190d233
  Peter van 't Hof authored Dec 4, 2014
  
  a190d233
- Pattern match refactor in ExtractAlignedFastq · b83f5736
  bow authored Dec 4, 2014
  
  b83f5736
- Documentation updates · 10518502
  bow authored Dec 4, 2014
  
  10518502
- Test refactors · 846acd6c
  bow authored Dec 4, 2014
  
  846acd6c
- No default limitation on variantcalling when target_bed is given · 09bf4a36
  Peter van 't Hof authored Dec 4, 2014
  
  09bf4a36
Dec 03, 2014
- Changes in documentation · 1a209ea0
  sajvanderzeeuw authored Dec 3, 2014
  
  1a209ea0
- Added 4 new options for vcfFilter · ecff240c
  Peter van 't Hof authored Dec 3, 2014
  
  ecff240c
Dec 02, 2014
- Fix bug on gubbins · d057ab01
  Peter van 't Hof authored Dec 2, 2014
  
  d057ab01
- Changes in documentation of GATK BASTY adn BastyGenerateFasta · 72936783
  sajvanderzeeuw authored Dec 2, 2014
  
  72936783
- Fix bug on gubbins · fbdd632c
  Peter van 't Hof authored Dec 2, 2014
  
  fbdd632c
- Changes in help screen GatkPipeline · 026b2015
  sajvanderzeeuw authored Dec 2, 2014
  
  026b2015
- Merge branch 'feature-gubbins' into 'develop' · deab689c
  bow authored Dec 2, 2014
  deab689c
- Fix bug on indel tree · 7e8cd038
  Peter van 't Hof authored Dec 2, 2014
  
  7e8cd038
- Changes in help screen tool BastyGenerateFasta · 9581d328
  sajvanderzeeuw authored Dec 2, 2014
  
  9581d328