removed mkdocs theme and OGE from docs

mkdocs.yml

@@ -7,21 +7,20 @@ pages:
 - ['pipelines/flexiprep.md', 'Pipelines', 'Flexiprep']
 - ['pipelines/mapping.md', 'Pipelines', 'Mapping']
 - ['pipelines/sage.md', 'Pipelines', 'Sage']
-- ['tools/SamplesTsvToJson.md','tools','SamplesTsvToJson']
-- ['tools/BastyGenerateFasta.md','tools','BastyGenerateFasta']
-- ['tools/bedtointerval.md','tools','BedToInterval']
-- ['tools/bedtoolscoveragetocounts.md','tools','BedtoolsCoverageToCounts']
-- ['tools/BiopetFlagstat.md','tools','BiopetFlagstat']
-- ['tools/CheckAllelesVcfInBam.md','tools','CheckAllelesVcfInBam']
-- ['tools/ExtractAlignedFastq.md','tools','ExtractAlignedFastq']
-- ['tools/FastqSplitter.md', 'tools','FastqSplitter']
-- ['tools/FindRepeatsPacBio.md','tools','FindRepeatsPacBio']
-- ['tools/VcfFilter.md','tools','VcfFilter']
-- ['tools/MpileupToVcf.md', 'tools', 'MpileupToVcf']
-- ['tools/sagetools.md', 'tools', 'Sagetools']
-- ['tools/WipeReads.md', 'tools', 'WipeReads']
-- ['cluster/oge.md', 'OpenGridEngine']
+- ['tools/SamplesTsvToJson.md','Tools','SamplesTsvToJson']
+- ['tools/BastyGenerateFasta.md','Tools','BastyGenerateFasta']
+- ['tools/bedtointerval.md','Tools','BedToInterval']
+- ['tools/bedtoolscoveragetocounts.md','Tools','BedtoolsCoverageToCounts']
+- ['tools/BiopetFlagstat.md','Tools','BiopetFlagstat']
+- ['tools/CheckAllelesVcfInBam.md','Tools','CheckAllelesVcfInBam']
+- ['tools/ExtractAlignedFastq.md','Tools','ExtractAlignedFastq']
+- ['tools/FastqSplitter.md', 'Tools','FastqSplitter']
+- ['tools/FindRepeatsPacBio.md','Tools','FindRepeatsPacBio']
+- ['tools/VcfFilter.md','Tools','VcfFilter']
+- ['tools/MpileupToVcf.md', 'Tools', 'MpileupToVcf']
+- ['tools/sagetools.md', 'Tools', 'Sagetools']
+- ['tools/WipeReads.md', 'Tools', 'WipeReads']
 - ['about.md', 'About']
 - ['license.md', 'License']
-theme: readthedocs
+#theme: readthedocs
 repo_url: https://git.lumc.nl/biopet/biopet
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