Fix bug on indel tree

7e8cd038 · Peter van 't Hof · 09c25863 · 7e8cd038
Commit 7e8cd038 authored Dec 02, 2014 by Peter van 't Hof
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protected/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala ...ain/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala +1 -1

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--- a/protected/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala
+++ b/protected/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala
@@ -107,7 +107,7 @@ class Basty(val root: Configurable) extends QScript with MultiSampleQScript {
    }

    addTreeJobs(catVariantsSnps.output, outputDir + "trees" + File.separator + "snps_only", "snps_only")
-    addTreeJobs(catVariantsSnps.output, outputDir + "trees" + File.separator + "snps_indels", "snps_indels")
+    addTreeJobs(catVariants.output, outputDir + "trees" + File.separator + "snps_indels", "snps_indels")
  }

  // Called for each sample