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biopet.biopet
Commits
9581d328
Commit
9581d328
authored
Dec 02, 2014
by
sajvanderzeeuw
Browse files
Changes in help screen tool BastyGenerateFasta
parent
1c537b84
Changes
1
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Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
View file @
9581d328
...
...
@@ -102,10 +102,10 @@ object BastyGenerateFasta extends ToolCommand {
}
text
(
"Output name in fasta file header"
)
opt
[
Int
](
"minAD"
)
unbounded
()
action
{
(
x
,
c
)
=>
c
.
copy
(
minAD
=
x
)
}
text
(
"min AD value in vcf file for sample"
)
}
text
(
"min AD value in vcf file for sample
. Defaults to: 8
"
)
opt
[
Int
](
"minDepth"
)
unbounded
()
action
{
(
x
,
c
)
=>
c
.
copy
(
minDepth
=
x
)
}
text
(
"min de
t
p in bam file"
)
}
text
(
"min dep
th
in bam file
. Defaults to: 8
"
)
opt
[
File
](
"reference"
)
unbounded
()
action
{
(
x
,
c
)
=>
c
.
copy
(
reference
=
x
)
}
text
(
"Indexed reference fasta file"
)
validate
{
x
=>
...
...
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