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Created with Raphaël 2.2.012Feb111096543230Jan292827262322212019161514131210986517Dec1611985432128Nov272524222120191817141211108765432131OctChange outputDir to FileAdd exon read count modeAdd option to supply strandedness protocoladding VCFWithVCFAdd strandedness enum valuesUpdate general structureAdd possible expression measuresUpdate config retrievalRemove unused Gentrap valuesFormattingMerge branch 'develop' into feature-gentrapMerge branch 'develop' into feature-unittest_coreMerge branch 'feature-fix_missing_values' into 'develop'Add notesAdd commentMake a val for globalConfig, test should now be able to override it so unit test are not depending on a global varSimplify sortingRemove unused lineFix formatFix fastqc dry run bugError cache now also works on executablesMerge branch 'develop' into feature-fix_missing_valuesFix hidden stacktracesRemove testsRemove unused lineaddError instead of throwing an exeptionAdded error cache to qscriptAdded todo on messageAdd bam2wig to imlAdd bam2wig in imlsReplace _ for nullRemove unused linesRemove double modulesMerge branch 'develop' into feature-gentrapsome nicer exceptionsremoved code duplicationmake better use of scala implicit returnsChange function names to camelCase styleFixing config valuesUse the correct path separator