1. 24 Feb, 2015 2 commits
    • Peter van 't Hof's avatar
      Fix bowtie when doing paired end · 5a9c2878
      Peter van 't Hof authored
      5a9c2878
    • bow's avatar
      Merge branch 'feature-summary' into 'develop' · 8dd310e6
      bow authored
      Feature summary
      
      * [x] Init version of summary framework
      * [x] Add framework to Gatkpipeline / BamMetrics/ Flexiprep / Mapping / Carp
      * [x] Convert old summary methods for flexiprep
      * [x] Add summary methods for bammetrics
      * [x] Add summary methods for mapping (most of this comes from BamMetrics)
      * [x] Add documentation for summary
      * [x] Add documentation for Flexiprep
      * [x] Add documentation for Mapping
      * [x] Add documentation for BamMetrics
      
      Complex pipelines like Gatk-pipeline, Carp, Yamsvp and Gentrap need to wait on those summaries. When implemented only the frame work they will grow when metrics and flexiprep also grows.
      
      See merge request !99
      8dd310e6
  2. 23 Feb, 2015 12 commits
  3. 19 Feb, 2015 22 commits
  4. 18 Feb, 2015 4 commits