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- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala 1 addition, 1 deletion...umc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala 4 additions, 2 deletions...scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala 49 additions, 21 deletions...scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala 3 additions, 4 deletions.../main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Seqstat.scala 1 addition, 1 deletion...c/main/scala/nl/lumc/sasc/biopet/extensions/Seqstat.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala 2 additions, 2 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectAlignmentSummaryMetrics.scala 1 addition, 1 deletion...et/extensions/picard/CollectAlignmentSummaryMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectInsertSizeMetrics.scala 1 addition, 1 deletion...c/biopet/extensions/picard/CollectInsertSizeMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/seqtk/SeqtkSeq.scala 6 additions, 1 deletion...scala/nl/lumc/sasc/biopet/extensions/seqtk/SeqtkSeq.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala 1 addition, 1 deletion...main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala 2 additions, 3 deletions.../src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
- public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/extensions/picard/CollectAlignmentSummaryMetricsTest.scala 1 addition, 1 deletion...xtensions/picard/CollectAlignmentSummaryMetricsTest.scala
- public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/extensions/picard/CollectInsertSizeMetricsTest.scala 1 addition, 1 deletion...opet/extensions/picard/CollectInsertSizeMetricsTest.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala 1 addition, 1 deletion...cala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
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