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eb8aef93

Commit eb8aef93 authored 10 years ago by Peter van 't Hof

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Fix picard summaries

parent a06e2726

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Changes 7

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public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 1 addition, 0 deletions

...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectAlignmentSummaryMetrics.scala 9 additions, 5 deletions

...et/extensions/picard/CollectAlignmentSummaryMetrics.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectInsertSizeMetrics.scala 1 addition, 1 deletion

...c/biopet/extensions/picard/CollectInsertSizeMetrics.scala
public/biopet-framework/src/test/resources/picard.alignmentMetrics 12 additions, 0 deletions

...opet-framework/src/test/resources/picard.alignmentMetrics
public/biopet-framework/src/test/resources/picard.insertsizemetrics 717 additions, 0 deletions

...pet-framework/src/test/resources/picard.insertsizemetrics
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/extensions/picard/CollectAlignmentSummaryMetricsTest.scala 23 additions, 0 deletions

...xtensions/picard/CollectAlignmentSummaryMetricsTest.scala
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/extensions/picard/CollectInsertSizeMetricsTest.scala 23 additions, 0 deletions

...opet/extensions/picard/CollectInsertSizeMetricsTest.scala

with 786 additions and 6 deletions

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