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biopet.biopet
Commits
3f85d3dc
Commit
3f85d3dc
authored
Feb 19, 2015
by
Sander Bollen
Browse files
Fixing expected info field test values
parent
a6e1f2bc
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VEPNormalizerTest.scala
View file @
3f85d3dc
...
...
@@ -63,7 +63,7 @@ class VEPNormalizerTest extends TestNGSuite with MockitoSugar with Matchers {
"Amino_acids"
,
"CDS_position"
,
"CLIN_SIG"
,
"Codons"
,
"Consequence"
,
"DISTANCE"
,
"EA_MAF"
,
"EUR_MAF"
,
"Existing_variation"
,
"Feature"
,
"Feature_type"
,
"GMAF"
,
"Gene"
,
"HGVSc"
,
"HGVSp"
,
"PUBMED"
,
"Protein_position"
,
"STRAND"
,
"SYMBOL"
,
"SYMBOL_SOURCE"
,
"cDNA_position"
)
"SYMBOL_SOURCE"
,
"cDNA_position"
)
.
map
(
"VEP_"
+
_
)
checkItems
(
items
)
}
...
...
@@ -74,7 +74,7 @@ class VEPNormalizerTest extends TestNGSuite with MockitoSugar with Matchers {
}
@Test
(
expectedExceptions
=
Array
(
classOf
[
IllegalArgumentException
]))
def
testNoCSQTagException
{
def
testNoCSQTagException
()
{
csqCheck
(
new
VCFFileReader
(
unvepped
,
false
).
getFileHeader
)
}
...
...
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