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biopet.biopet
Commits
1adebf9e
Commit
1adebf9e
authored
Feb 19, 2015
by
Peter van 't Hof
Browse files
Fix format
parent
246f4031
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
1adebf9e
...
...
@@ -129,7 +129,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
* @param chunk
* @return
*/
def
runTrimClip
(
R1_in
:
File
,
outDir
:
File
,
chunk
:
String
)
:
(
File
,
File
,
List
[
File
])
=
def
runTrimClip
(
R1_in
:
File
,
outDir
:
File
,
chunk
:
String
)
:
(
File
,
File
,
List
[
File
])
=
runTrimClip
(
R1_in
,
new
File
(
""
),
outDir
,
chunk
)
/**
...
...
@@ -138,7 +138,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
* @param outDir
* @return
*/
def
runTrimClip
(
R1_in
:
File
,
outDir
:
File
)
:
(
File
,
File
,
List
[
File
])
=
def
runTrimClip
(
R1_in
:
File
,
outDir
:
File
)
:
(
File
,
File
,
List
[
File
])
=
runTrimClip
(
R1_in
,
new
File
(
""
),
outDir
,
""
)
/**
...
...
@@ -148,7 +148,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
* @param outDir
* @return
*/
def
runTrimClip
(
R1_in
:
File
,
R2_in
:
File
,
outDir
:
File
)
:
(
File
,
File
,
List
[
File
])
=
def
runTrimClip
(
R1_in
:
File
,
R2_in
:
File
,
outDir
:
File
)
:
(
File
,
File
,
List
[
File
])
=
runTrimClip
(
R1_in
,
R2_in
,
outDir
,
""
)
/**
...
...
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