Commits · 52928227c6ece8944b9c1a8d997456b6cbaf8d94 · Mirrors / biopet.biopet

Oct 02, 2015
- Fix code style warnings · 52928227
  Peter van 't Hof authored 9 years ago
  
  52928227
- Removed zcat step · 699c7baf
  Peter van 't Hof authored 9 years ago
  
  699c7baf
- Move input for gzip to stdin to not remove file · 2156f192
  Peter van 't Hof authored 9 years ago
  
  2156f192
- Fixed graph issue · 47b02b54
  Peter van 't Hof authored 9 years ago
  
  47b02b54
- Fixed summary files of flexiprep · 5d5c30c1
  Peter van 't Hof authored 9 years ago
  
  5d5c30c1
- Fixed issue · a7da2f6a
  Peter van 't Hof authored 9 years ago
  
  a7da2f6a
Oct 01, 2015
- setupRetry calls setupretry of pipe functions · 86c0c144
  Peter van 't Hof authored 9 years ago
  
  86c0c144
- Fix java memory resource · 15dda798
  Peter van 't Hof authored 9 years ago
  
  15dda798
- Fixed vmem · 06b9e5f2
  Peter van 't Hof authored 9 years ago
  
  06b9e5f2
- fixed regex · 7bd889e4
  Peter van 't Hof authored 9 years ago
  
  7bd889e4
- Fix deps · 7b028085
  Peter van 't Hof authored 9 years ago
  
  7b028085
- Switch to CommandLineResources · 72761225
  Peter van 't Hof authored 9 years ago
  
  72761225
- Use combine resources for pipes · 1199a39e
  Peter van 't Hof authored 9 years ago
  
  1199a39e
- Extracted resoures to trait, usable on non biopet CommandLineFunctions · e7a138d9
  Peter van 't Hof authored 9 years ago
  
  e7a138d9
Sep 30, 2015
- Removed test · 310b07ef
  Peter van 't Hof authored 9 years ago
  
  310b07ef
- Bash script to keep track of running jobs · ade862a4
  Peter van 't Hof authored 9 years ago
  
  ade862a4
Sep 29, 2015
- Switch to fifo pipes · 8ae539f7
  Peter van 't Hof authored 9 years ago
  
  8ae539f7
- Added set limits to bash script · 9230f543
  Peter van 't Hof authored 9 years ago
  
  9230f543
Sep 28, 2015
- Fix for #210 · 910074b8
  Peter van 't Hof authored 9 years ago
  
  910074b8
- Changed own vmem · adb6ffe1
  Peter van 't Hof authored 9 years ago
  
  adb6ffe1
- Adding summary stats · f42be845
  Peter van 't Hof authored 9 years ago
  
  f42be845
- Fixed resources · 6fc77a78
  Peter van 't Hof authored 9 years ago
  
  6fc77a78
- Set remote command for local execution · 3ae49381
  Peter van 't Hof authored 9 years ago
  
  3ae49381
- Aggregate threads and corememory for pipes · dd6dc7b7
  Peter van 't Hof authored 9 years ago
  
  dd6dc7b7
- Catch NullPointer from queue and convert is to null instead of an failure · bdd9ce38
  Peter van 't Hof authored 9 years ago
  
  bdd9ce38
- Moved code · c6980164
  Peter van 't Hof authored 9 years ago
  
  c6980164
Sep 27, 2015
- Hide null pointen from unit tests · beef0cec
  Peter van 't Hof authored 9 years ago
  
  beef0cec
- Fixed single-end runs · 6bad7eaf
  Peter van 't Hof authored 9 years ago
  
  6bad7eaf
- Overrider default shell from queue · 41857e5d
  Peter van 't Hof authored 9 years ago
  
  41857e5d
Sep 25, 2015
- Added deps · 5096c156
  Peter van 't Hof authored 9 years ago
  
  5096c156
- Fix fastqc dependency · 206c7f01
  Peter van 't Hof authored 9 years ago
  
  206c7f01
- Fixed QcCommand · 7a3bf3b2
  Peter van 't Hof authored 9 years ago
  
  7a3bf3b2
Sep 24, 2015
- Fix import · 36fd8269
  Peter van 't Hof authored 9 years ago
  
  36fd8269
- Added FilePipes · 04210893
  Peter van 't Hof authored 9 years ago
  
  04210893
Sep 23, 2015
- Added support to have a pipe as input file · f298fe2c
  Peter van 't Hof authored 9 years ago
  
  f298fe2c
- Remove count tests · 839b0c12
  Peter van 't Hof authored 9 years ago
  
  839b0c12
- Refactor flexiprep, more pipes are used now · c6c7c899
  Peter van 't Hof authored 9 years ago
  
  c6c7c899
- Adding a QC command · 8e950ef8
  Peter van 't Hof authored 9 years ago
  
  8e950ef8
- Remove intermediate · 2387d560
  Peter van 't Hof authored 9 years ago
  
  2387d560
- Fixed output pipeline · e40baa30
  Peter van 't Hof authored 9 years ago
  
  e40baa30