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biopet.biopet
Commits
5096c156
Commit
5096c156
authored
Sep 25, 2015
by
Peter van 't Hof
Browse files
Added deps
parent
206c7f01
Changes
1
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public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
5096c156
...
...
@@ -204,6 +204,8 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
fqSync
.
threads
=
6
fqSync
.
outputStats
=
new
File
(
outDir
,
s
"${sampleId.getOrElse("
x
")}-${libId.getOrElse("
x
")}.sync.stats"
)
fqSync
.
isIntermediate
=
!
keepQcFastqFiles
fqSync
.
deps
::=
fastqc_R1
.
output
fqSync
.
deps
::=
fastqc_R2
.
output
add
(
fqSync
)
addSummarizable
(
fqSync
,
"fastq_sync"
)
outputFiles
+=
(
"syncStats"
->
fqSync
.
outputStats
)
...
...
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