Commits · 3ec606724cb6cc101957ae926a78c481838eb751 · Mirrors / biopet.biopet

Mar 11, 2015
- Update licenses · 3ec60672
  bow authored 10 years ago
  
  3ec60672
- Bump version to 0.3.0-RC1 · a289c540
  bow authored 10 years ago
  
  a289c540
- Fix missing read group assignment for GSNAP and TopHat · cfd74de0
  bow authored 10 years ago
  
  cfd74de0
- changed .bigwig extension to .bw · d9e2a1e2
  Sander van der Zeeuw authored 10 years ago
  
  d9e2a1e2
- removing commented out lines · 7059cf76
  Sander Bollen authored 10 years ago
  
  7059cf76
- threads in VEP wrapper for Toucan · 3ff984dd
  Sander Bollen authored 10 years ago
  
  3ff984dd
Mar 10, 2015
- Various fixes for cluster compatibility · 41f9df22
  bow authored 10 years ago
  
  41f9df22
- Ensure correct config name · 4521305b
  bow authored 10 years ago
  
  4521305b
- More missing executables config · 32796b57
  bow authored 10 years ago
  
  32796b57
- Add missing mock executable for testing · 3a1f0235
  bow authored 10 years ago
  
  3a1f0235
- Add missing mock bam2wig executables in GentrapTest · 0109059c
  bow authored 10 years ago
  
  0109059c
- Fix wrong Cufflinks threads · e459cf6e
  bow authored 10 years ago
  
  e459cf6e
- Fix wrong threads setting in Star wrapper · bfa58fe2
  bow authored 10 years ago
  
  bfa58fe2
- Fix wrong threads setting in Bowtie and Bwa wrappers · eff9c5cd
  bow authored 10 years ago
  
  eff9c5cd
- Fix missing wiggle jobs · 8bed40ff
  bow authored 10 years ago
  
  8bed40ff
- Fix wrong threads setting in TopHat wrapper · 57622630
  bow authored 10 years ago
  
  57622630
- Fix wrong threads setting in GSNAP wrapper · dbab1a53
  bow authored 10 years ago
  
  dbab1a53
Mar 09, 2015
- Update wrong output file names · e76f0625
  bow authored 10 years ago
  
  e76f0625
- Update unit test for Gentrap · 3223c73b
  bow authored 10 years ago
  
  3223c73b
- Fix errors caused by merging · 9c5f43ad
  bow authored 10 years ago
  
  9c5f43ad
- Report update · 5db19c93
  bow authored 10 years ago
  
  5db19c93
- Formatting updates · 1c9c025e
  bow authored 10 years ago
  
  1c9c025e
- Fix wrong parent for Basty in the pom.xml file · 118f09fd
  bow authored 10 years ago
  
  118f09fd
- Fix output directory path in Toucan · a9645551
  Sander Bollen authored 10 years ago
  
  a9645551
- Finish overview and multi sample section · 7b936070
  bow authored 10 years ago
  
  7b936070
- Update heatmap plotting script · dd7f8389
  bow authored 10 years ago
  
  dd7f8389
- Update gentrap summary and stats · 4b348b21
  bow authored 10 years ago
  
  4b348b21
- Fix wrong quote usage · 0c25f894
  bow authored 10 years ago
  
  0c25f894
- RCommandlineFunction Trait · 62cc447a
  Wai Yi Leung authored 10 years ago
  
  Conflicts: public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/RscriptCommandLineFunction.scala
  62cc447a
- Add Tophat to Mapping module · 4e6cf4dc
  bow authored 10 years ago
  
  4e6cf4dc
- Add functional Tophat wrapper · 1c1d9277
  bow authored 10 years ago
  
  1c1d9277
- Fix error on zipped input without flexiprep · 780ab2df
  Peter van 't Hof authored 10 years ago
  
  780ab2df
- Add initial version table to report[C · b71ac0fe
  bow authored 10 years ago
  
  b71ac0fe
- Force version retrieval and path resolution in CustomVarscan · 133cd485
  bow authored 10 years ago
  
  133cd485
- More efficient code · bd8f8477
  Peter van 't Hof authored 10 years ago
  
  bd8f8477
- More efficient case class · 9781583e
  Peter van 't Hof authored 10 years ago
  
  9781583e
- Fix array out of bound error · e8186cf3
  Peter van 't Hof authored 10 years ago
  
  e8186cf3
- Fix 'n' bug for seqstat · 4dd30a28
  Peter van 't Hof authored 10 years ago
  
  4dd30a28
- Fix Some(versions) · dee63481
  Peter van 't Hof authored 10 years ago
  
  dee63481
- Added notes · 9451debe
  Peter van 't Hof authored 10 years ago
  
  9451debe