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biopet.biopet
Commits
32796b57
Commit
32796b57
authored
Mar 10, 2015
by
bow
Browse files
More missing executables config
parent
3a1f0235
Changes
1
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public/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala
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32796b57
...
...
@@ -184,9 +184,9 @@ object GentrapTest {
// fastqc executables
"fastqc"
,
"seqtk"
,
"sickle"
,
"cutadapt"
,
// mapping executables
"star"
,
"bowtie"
,
"samtools"
,
"gsnap"
,
"star"
,
"bowtie"
,
"samtools"
,
"gsnap"
,
"tophat"
,
// gentrap executables
"cufflinks"
,
"htseq
-
count"
,
"grep"
,
"pdflatex"
,
"Rscript"
,
"tabix"
,
"bgzip"
,
"htseq-count"
,
"cufflinks"
,
"htseqcount"
,
"grep"
,
"pdflatex"
,
"Rscript"
,
"tabix"
,
"bgzip"
,
// bam2wig executables
"igvtools"
,
"wigtobigwig"
).
map
{
case
exe
=>
exe
->
Map
(
"exe"
->
"test"
)
}.
toMap
...
...
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