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biopet.biopet
Commits
7059cf76
Commit
7059cf76
authored
Mar 11, 2015
by
Sander Bollen
Browse files
removing commented out lines
parent
3ff984dd
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
View file @
7059cf76
...
...
@@ -23,7 +23,6 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
override
val
versionRegex
=
"""version (\d*)"""
.
r
override
def
versionCommand
=
executable
+
" "
+
vep_script
+
" --help"
//override val defaultThreads = 1
//Boolean vars
var
v
:
Boolean
=
config
(
"v"
,
default
=
true
)
...
...
@@ -121,7 +120,6 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
// Numeric args
override
val
defaultThreads
:
Int
=
config
(
"fork"
,
default
=
2
)
//var fork: Option[Int] = config("fork", default = nCoresRequest)
var
cache_version
:
Option
[
Int
]
=
config
(
"cache_version"
)
var
freq_freq
:
Option
[
Float
]
=
config
(
"freq_freq"
)
var
port
:
Option
[
Int
]
=
config
(
"port"
)
...
...
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