Commit 9451debe authored by Peter van 't Hof's avatar Peter van 't Hof
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Added notes

parent 00aa8bb5
......@@ -168,7 +168,9 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag {
/** Makes a vcf file from a mpileup without statistics */
class RawVcf extends Variantcaller {
val name = "raw"
protected val defaultPrio = 999
// This caller is designed as fallback when other variantcallers fails to report
protected val defaultPrio = Int.MaxValue
/** Final output file of this mode */
def outputFile = new File(outputDir, namePrefix + ".raw.vcf.gz")
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