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biopet.biopet
Commits
9451debe
Commit
9451debe
authored
Mar 09, 2015
by
Peter van 't Hof
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parent
00aa8bb5
Changes
1
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
View file @
9451debe
...
...
@@ -168,7 +168,9 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag {
/** Makes a vcf file from a mpileup without statistics */
class
RawVcf
extends
Variantcaller
{
val
name
=
"raw"
protected
val
defaultPrio
=
999
// This caller is designed as fallback when other variantcallers fails to report
protected
val
defaultPrio
=
Int
.
MaxValue
/** Final output file of this mode */
def
outputFile
=
new
File
(
outputDir
,
namePrefix
+
".raw.vcf.gz"
)
...
...
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