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biopet.biopet
Commits
e459cf6e
Commit
e459cf6e
authored
Mar 10, 2015
by
bow
Browse files
Fix wrong Cufflinks threads
parent
8bed40ff
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cufflinks.scala
View file @
e459cf6e
...
...
@@ -191,10 +191,14 @@ class Cufflinks(val root: Configurable) extends BiopetCommandLineFunction {
override
def
versionCommand
=
executable
override
val
versionExitcode
=
List
(
0
,
1
)
override
def
beforeGraph
:
Unit
=
{
threads
=
num_threads
.
getOrElse
(
1
)
}
def
cmdLine
=
required
(
executable
)
+
required
(
"--output-dir"
,
output_dir
)
+
optional
(
"--num-threads"
,
nCoresRequest
)
+
optional
(
"--num-threads"
,
threads
)
+
optional
(
"--seed"
,
seed
)
+
optional
(
"--GTF"
,
GTF
)
+
optional
(
"--GTF-guide"
,
GTF_guide
)
+
...
...
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