Commit e459cf6e authored by bow's avatar bow
Browse files

Fix wrong Cufflinks threads

parent 8bed40ff
......@@ -191,10 +191,14 @@ class Cufflinks(val root: Configurable) extends BiopetCommandLineFunction {
override def versionCommand = executable
override val versionExitcode = List(0, 1)
override def beforeGraph: Unit = {
threads = num_threads.getOrElse(1)
}
def cmdLine =
required(executable) +
required("--output-dir", output_dir) +
optional("--num-threads", nCoresRequest) +
optional("--num-threads", threads) +
optional("--seed", seed) +
optional("--GTF", GTF) +
optional("--GTF-guide", GTF_guide) +
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment