Commit a9645551 authored by Sander Bollen's avatar Sander Bollen
Browse files

Fix output directory path in Toucan

parent 7339ef7b
......@@ -30,7 +30,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript {
def biopetScript(): Unit = {
val vep = new VariantEffectPredictor(this)
vep.input = inputVCF
vep.output = outputDir + inputVCF.getName.stripSuffix(".gz").stripSuffix(".vcf") + ".vep.vcf"
vep.output = new File(outputDir, inputVCF.getName.stripSuffix(".gz").stripSuffix(".vcf") + ".vep.vcf")
vep.isIntermediate = true
add(vep)
......
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