Fix output directory path in Toucan

a9645551 · Sander Bollen · 7339ef7b · a9645551
Commit a9645551 authored Mar 09, 2015 by Sander Bollen
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public/toucan/src/main/scala/nl/lumc/sasc/biopet/pipelines/toucan/Toucan.scala ...n/scala/nl/lumc/sasc/biopet/pipelines/toucan/Toucan.scala +1 -1

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--- a/public/toucan/src/main/scala/nl/lumc/sasc/biopet/pipelines/toucan/Toucan.scala
+++ b/public/toucan/src/main/scala/nl/lumc/sasc/biopet/pipelines/toucan/Toucan.scala
@@ -30,7 +30,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript {
  def biopetScript(): Unit = {
    val vep = new VariantEffectPredictor(this)
    vep.input = inputVCF
-    vep.output = outputDir + inputVCF.getName.stripSuffix(".gz").stripSuffix(".vcf") + ".vep.vcf"
+    vep.output = new File(outputDir, inputVCF.getName.stripSuffix(".gz").stripSuffix(".vcf") + ".vep.vcf")
    vep.isIntermediate = true
    add(vep)