Commits · 38ec7a1db016a158f324b8dc2d7a8d4b4c816d3b · Mirrors / biopet.biopet

28 Jul, 2015 11 commits
- updating docs for flexiprep · 38ec7a1d
  Peter van 't Hof authored Jul 28, 2015
  
  38ec7a1d
- Remove some defaults · bc2a511c
  Peter van 't Hof authored Jul 28, 2015
  
  bc2a511c
- Adding more information about variantcallers · f634582b
  Peter van 't Hof authored Jul 28, 2015
  
  f634582b
- Added yaml · 08e4b344
  Peter van 't Hof authored Jul 28, 2015
  
  08e4b344
- Remove duplicate file · dcd106b2
  Peter van 't Hof authored Jul 28, 2015
  
  dcd106b2
- Bumb version to 0.4.0-RC2 · d5834cba
  Peter van 't Hof authored Jul 28, 2015
  
  d5834cba
- 1 level nested output_dir now allowed for log file · f79469b3
  Peter van 't Hof authored Jul 28, 2015
  
  f79469b3
- Added bam index as dependency · aeb0739f
  Peter van 't Hof authored Jul 28, 2015
  
  aeb0739f
- updating options for Mapping · 42e56640
  Peter van 't Hof authored Jul 28, 2015
  
  42e56640
- Adding minimal config · 67d911cd
  Peter van 't Hof authored Jul 28, 2015
  
  67d911cd
- Fixed link · b0289eef
  Peter van 't Hof authored Jul 28, 2015
  
  b0289eef
27 Jul, 2015 28 commits
- Adding release notes to main page · 761cb9f5
  Peter van 't Hof authored Jul 27, 2015
  
  761cb9f5
- .yml also handled as YAML config files · 3d7a6bff
  Peter van 't Hof authored Jul 27, 2015
  
  3d7a6bff
- Raise memory and threads for report builder · 0c466159
  Peter van 't Hof authored Jul 27, 2015
  
  0c466159
- Merge branch 'docs-0.4.0' into 'release-0.4.0' · 2b8a3298
  Peter van 't Hof authored Jul 27, 2015
```
Docs 0.4.0

See merge request !202
```
  2b8a3298
- Updated release notes · 5f8a7d58
  Peter van 't Hof authored Jul 27, 2015
  
  5f8a7d58
- Disabled Yamsvp · 34c45523
  Peter van 't Hof authored Jul 27, 2015
  
  34c45523
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored Jul 27, 2015
  
  5224df5b
- Adding license · bcc9debe
  Peter van 't Hof authored Jul 27, 2015
  
  bcc9debe
- Merge branch 'feature-yamsvp' into 'develop' · 9b41313c
  bow authored Jul 27, 2015
```
Feature yamsvp

Convert yamsvp to also work from a bam file and be included in Shiva

See merge request !201
```
  9b41313c
- General update for clever · 05a50457
  Peter van 't Hof authored Jul 27, 2015
  
  05a50457
- remove catvariants job · 5396b8df
  Peter van 't Hof authored Jul 27, 2015
  
  5396b8df
- raise memory · 6fe734b8
  Peter van 't Hof authored Jul 27, 2015
  
  6fe734b8
- Raise memory · 8eec3827
  Peter van 't Hof authored Jul 27, 2015
  
  8eec3827
- Fixed delly output file names · aa53de21
  Peter van 't Hof authored Jul 27, 2015
  
  aa53de21
- Fixed typo · 4550f9b0
  Peter van 't Hof authored Jul 27, 2015
  
  4550f9b0
- Fix config error · 3c8c6fa3
  Peter van 't Hof authored Jul 27, 2015
  
  3c8c6fa3
- Adding sv jobs · 2d4ea4b7
  Peter van 't Hof authored Jul 27, 2015
  
  2d4ea4b7
- Better support for sets · e21b49e2
  Peter van 't Hof authored Jul 27, 2015
  
  e21b49e2
- fix camelCase names · 9605d702
  Peter van 't Hof authored Jul 27, 2015
  
  9605d702
- Fix error when no mode selected · db06f6bc
  Peter van 't Hof authored Jul 27, 2015
  
  db06f6bc
- Added sv calling to shiva · 844ff098
  Peter van 't Hof authored Jul 27, 2015
  
  844ff098
- Fix add method · 9ca827e9
  Peter van 't Hof authored Jul 27, 2015
  
  9ca827e9
- Removed Yamsvp from executable · 5d834e35
  Peter van 't Hof authored Jul 27, 2015
  
  5d834e35
- Changed default options · 1b56691e
  Peter van 't Hof authored Jul 27, 2015
  
  1b56691e
- General update of extension · a91e1f83
  Peter van 't Hof authored Jul 27, 2015
  
  a91e1f83
- Fix args · e58842e5
  Peter van 't Hof authored Jul 27, 2015
  
  e58842e5
- Disabled Yamsvp from maven · bcfaa188
  Peter van 't Hof authored Jul 27, 2015
  
  bcfaa188
- Remove unused source · 571223aa
  Peter van 't Hof authored Jul 27, 2015
  
  571223aa
24 Jul, 2015 1 commit
- Update breakdancer · a5ecd049
  Peter van 't Hof authored Jul 24, 2015
  
  a5ecd049