Commit 38ec7a1d authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

updating docs for flexiprep

parent bc2a511c
......@@ -55,8 +55,8 @@ All other values should be provided in the config. Specific config values toward
| Name | Type | Function |
| ---- | ---- | -------- |
| skiptrim | Boolean | Skip the trimming step |
| skipclip | Boolean | Skip the clipping step |
| skiptrim | Boolean | Default false, if true the trimming step is skipped |
| skipclip | Boolean | Default false, if true the clipping step is skipped |
## Result files
The results from this pipeline will be a fastq file.
......@@ -139,5 +139,7 @@ The pipeline also outputs 2 Fastqc runs one before and one after quality control
│   │   └── summary.txt
│   └── mySample_01.R2.qc_fastqc.zip
├── mySample_01.R2.qc.fastq.gz
└── mySample_01.R2.qc.fastq.gz.md5
├── mySample_01.R2.qc.fastq.gz.md5
└── report
~~~
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