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biopet.biopet
Commits
5396b8df
Commit
5396b8df
authored
Jul 27, 2015
by
Peter van 't Hof
Browse files
remove catvariants job
parent
6fe734b8
Changes
1
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Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala
View file @
5396b8df
...
...
@@ -81,12 +81,12 @@ class Delly(val root: Configurable) extends QScript with BiopetQScript with Refe
variants
.
outputFile
=
this
.
outputVcf
variants
.
reference
=
referenceFasta
()
// add the job
add
(
variants
)
//
add(variants)
Some
(
outputVcf
)
}
else
if
(
vcfFiles
.
size
==
1
)
{
// TODO: pretify this
val
ln
=
Ln
(
this
,
vcfFiles
.
head
.
_2
,
this
.
outputVcf
,
relative
=
true
)
add
(
ln
)
//
add(ln)
Some
(
ln
.
output
)
}
else
None
...
...
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