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Commit 5396b8df authored by Peter van 't Hof's avatar Peter van 't Hof
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remove catvariants job

parent 6fe734b8
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......@@ -81,12 +81,12 @@ class Delly(val root: Configurable) extends QScript with BiopetQScript with Refe
variants.outputFile = this.outputVcf
variants.reference = referenceFasta()
// add the job
add(variants)
//add(variants)
Some(outputVcf)
} else if (vcfFiles.size == 1) {
// TODO: pretify this
val ln = Ln(this, vcfFiles.head._2, this.outputVcf, relative = true)
add(ln)
//add(ln)
Some(ln.output)
} else None
......
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