remove catvariants job

5396b8df · Peter van 't Hof · 6fe734b8 · 5396b8df
Commit 5396b8df authored Jul 27, 2015 by Peter van 't Hof
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala ...in/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala +2 -2

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--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala
@@ -81,12 +81,12 @@ class Delly(val root: Configurable) extends QScript with BiopetQScript with Refe
      variants.outputFile = this.outputVcf
      variants.reference = referenceFasta()
      // add the job
-      add(variants)
+      //add(variants)
      Some(outputVcf)
    } else if (vcfFiles.size == 1) {
      // TODO: pretify this
      val ln = Ln(this, vcfFiles.head._2, this.outputVcf, relative = true)
-      add(ln)
+      //add(ln)
      Some(ln.output)
    } else None