Adding sv jobs

2d4ea4b7 · Peter van 't Hof · e21b49e2 · 2d4ea4b7
Commit 2d4ea4b7 authored Jul 27, 2015 by Peter van 't Hof
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala ...cala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala +8 -0

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--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
@@ -290,6 +290,14 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference {
      addAll(vc.functions)
      addSummaryQScript(vc)
    })
+
+    svCalling.foreach(sv => {
+      sv.outputDir = new File(outputDir, "sc_calling")
+      sv.init()
+      sv.biopetScript()
+      addAll(sv.functions)
+      addSummaryQScript(sv)
+    })
  }

  /** Location of summary file */