Commits · c86806143b67467ad7124a79f6ffc189ad938b4b · Klinische Genetica / capture-lumc / hutspot · GitLab

Snippets Groups Projects

May 14, 2019
- re-export cutadapt env without build no's · c8680614
  Sander Bollen authored 5 years ago
  
  c8680614
- re-export covstat env without build no's · 8ec35f7e
  Sander Bollen authored 5 years ago
  
  8ec35f7e
- re-export bwa env without build no's · 6d7855c6
  Sander Bollen authored 5 years ago
  
  6d7855c6
- re-export collectstats env without build no's · 666c490c
  Sander Bollen authored 5 years ago
  
  666c490c
- set -Xmx4G to markduplicates to prevent memory errors in some WGS · 168e60be
  Sander Bollen authored 5 years ago
  
  samples.
  168e60be
Apr 30, 2019
- -T no longer exists in snakemake 5 · 7a1f120f
  Sander Bollen authored 5 years ago
  
  View commits for tag v1.1.0 v1.1.0
  
  7a1f120f
- bump snakemake version to at least 5.2.0 so we can use the "directory" · 2b1f5ca3
  Sander Bollen authored 5 years ago
  
  directive
  2b1f5ca3
- Merge pull request #3 from LUMC/java-conda · d21534e5
  Sander Bollen authored 5 years ago
  
  remove java dependency
  Unverified
  
  d21534e5
Apr 29, 2019
- remove java dependency · e1f91027
  Sander Bollen authored 5 years ago
  
  e1f91027
Mar 28, 2019
- update submodule · 5970e699
  Sander Bollen authored 5 years ago
  
  5970e699
- missing dollar sign · 6cbf1c80
  Sander Bollen authored 5 years ago
  
  6cbf1c80
- add cluster status in functional test yaml · 13097276
  Sander Bollen authored 5 years ago
  
  13097276
- recursive submodule strategy · 0112fcdb
  Sander Bollen authored 5 years ago
  
  0112fcdb
- add slurm-cluster-status as submodule · a66ab1ee
  Sander Bollen authored 5 years ago
  
  a66ab1ee
- move yaml · e2ae59f2
  Sander Bollen authored 5 years ago
  
  e2ae59f2
- move sge cluster to cluster subdirectory · 5399fc25
  Sander Bollen authored 5 years ago
  
  5399fc25
Mar 27, 2019
- double quotes · a7ee85d4
  Sander Bollen authored 5 years ago
  
  a7ee85d4
- use --parsable for sbatch · 75938280
  Sander Bollen authored 5 years ago
  
  75938280
Mar 26, 2019
- fix conda bin · c893a53c
  Sander Bollen authored 5 years ago
  
  c893a53c
- fix gitlab ci yaml · cbe22907
  Sander Bollen authored 5 years ago
  
  cbe22907
- functional test yml · 96489f04
  Sander Bollen authored 5 years ago
  
  96489f04
- Merge pull request #2 from LUMC/use-builtin-output-dir · 14eed9ee
  Sander Bollen authored 5 years ago
  
  Use builtin output dir
  Unverified
  
  14eed9ee
- fix path · 2db357e3
  Sander Bollen authored 5 years ago
  
  2db357e3
- keep workflow wd · 72629365
  Sander Bollen authored 5 years ago
  
  72629365
- integration tests in gitlab ci · 4aa40f5c
  Sander Bollen authored 5 years ago
  
  4aa40f5c
- add ref.dict to test data · 06fe1fb7
  Sander Bollen authored 5 years ago
  
  06fe1fb7
- add bwa indexes for ref · 6b467c37
  Sander Bollen authored 5 years ago
  
  6b467c37
- proper pairing for tests fq files · db46f2b3
  Sander Bollen authored 5 years ago
  
  db46f2b3
- fix sanity checks · 74ba06c8
  Sander Bollen authored 5 years ago
  
  74ba06c8
- better indentation · ad2eb71b
  Sander Bollen authored 5 years ago
  
  ad2eb71b
- fix syntax errors · ef4bf0f0
  Sander Bollen authored 5 years ago
  
  ef4bf0f0
Mar 21, 2019
- use full path in softlinks in seqtk.sh · ac58a0c1
  Sander Bollen authored 5 years ago
  
  ac58a0c1
- remove OUTPUT_DIR config value · 73091256
  Sander Bollen authored 5 years ago
  
  73091256
- remove out_dir calls · a62d53f9
  Sander Bollen authored 5 years ago
  
  a62d53f9
- click · 1a7c51a9
  Sander Bollen authored 5 years ago
  
  1a7c51a9
- fix readme on output dir · 0d5203ee
  Sander Bollen authored 5 years ago
  
  0d5203ee
Mar 12, 2019
- math doesn't work on github · 2a3b54b3
  Sander Bollen authored 6 years ago
  
  Unverified
  
  2a3b54b3
- Merge branch 'licensing' into 'master' · c6bdcbee
  Sander Bollen authored 6 years ago
  
  Licensing See merge request !10
  c6bdcbee
- add docker tags · 0bb20d61
  Sander Bollen authored 6 years ago
  
  0bb20d61
- license headers to scripts · c9e11a9e
  Sander Bollen authored 6 years ago
  
  c9e11a9e