Commit a7ee85d4 authored by Sander Bollen's avatar Sander Bollen
Browse files

double quotes

parent 75938280
Pipeline #2490 failed with stages
in 16 minutes and 29 seconds
......@@ -2,7 +2,7 @@
command: >-
bash -c '
snakemake --use-conda --conda-prefix ${CONDA_PREFIX} --jobs 100 -w 120
--cluster 'sbatch --parsable' -r -p -s Snakefile -T
--cluster "sbatch --parsable" -r -p -s Snakefile -T
--config JAVA=$(which java)
REFERENCE=${FUNCTIONAL_REF} GATK=${GATK_JAR}
DBSNP=${FUNCTIONAL_DBSNP}
......
......@@ -2,7 +2,7 @@
command: >-
bash -c '
snakemake --use-conda --conda-prefix ${CONDA_PREFIX} --jobs 100 -w 120
--cluster 'sbatch --parsable' -r -p -s Snakefile -T
--cluster "sbatch --parsable" -r -p -s Snakefile -T
--config JAVA=$(which java)
REFERENCE=tests/data/ref.fa GATK=${GATK_JAR}
DBSNP=tests/data/database.vcf.gz
......
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