Commit 6cbf1c80 authored by Sander Bollen's avatar Sander Bollen
Browse files

missing dollar sign

parent 13097276
Pipeline #2501 failed with stages
in 68 minutes and 46 seconds
......@@ -3,7 +3,7 @@
bash -c '
snakemake --use-conda --conda-prefix ${CONDA_PREFIX} --jobs 100 -w 120
--cluster "sbatch --parsable"
--cluster-status "{PWD}/cluster/slurm-cluster-status/slurm-cluster-status.py"
--cluster-status "${PWD}/cluster/slurm-cluster-status/slurm-cluster-status.py"
-r -p -s Snakefile -T
--config JAVA=$(which java)
REFERENCE=${FUNCTIONAL_REF} GATK=${GATK_JAR}
......
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