Commit 2b1f5ca3 authored by Sander Bollen's avatar Sander Bollen
Browse files

bump snakemake version to at least 5.2.0 so we can use the "directory"

directive
parent d21534e5
Pipeline #2549 failed with stages
in 1 minute and 50 seconds
......@@ -197,7 +197,7 @@ rule all:
rule create_markdup_tmp:
"""Create tmp directory for mark duplicates"""
output: ancient("tmp")
output: directory("tmp")
shell: "mkdir -p {output}"
rule genome:
......
name: hutspot
channels:
- bioconda
- conda-forge
- defaults
- r
- conda-forge
- bioconda
- defaults
dependencies:
- cyvcf2=0.8.0=py36_0
- filechunkio=1.6=py36_0
- ftputil=3.2=py36_0
- pyfaidx=0.5.0=py36_0
- pysftp=0.2.9=py36_0
- pyvcf=0.6.8=py36_0
- snakemake=4.3.0=py36_0
- aioeasywebdav=2.2.0=py36_0
- aiohttp=2.0.7=py36_0
- appdirs=1.4.3=py_0
- asn1crypto=0.22.0=py36_0
- async-timeout=1.2.1=py36_0
- backports=1.0=py36_1
- backports.functools_lru_cache=1.4=py36_1
- ca-certificates=2017.7.27.1=0
- certifi=2017.7.27.1=py36_0
- cffi=1.10.0=py36_0
- chardet=3.0.4=py36_0
- click=6.7=py36_0
- coloredlogs=7.1=py36_0
- configargparse=0.12.0=py36_0
- cryptography=2.0.3=py36_0
- cycler=0.10.0=py36_0
- dbus=1.10.22=0
- docutils=0.14=py36_0
- drmaa=0.7.7=py36_0
- dropbox=8.4.0=py_0
- expat=2.2.1=0
- fontconfig=2.12.1=5
- freetype=2.7=1
- gettext=0.19.7=1
- glib=2.53.5=0
- gst-plugins-base=1.8.0=0
- gstreamer=1.8.0=1
- humanfriendly=4.4=py36_0
- icu=58.1=1
- idna=2.6=py36_1
- jpeg=9b=2
- libffi=3.2.1=3
- libiconv=1.14=4
- libpng=1.6.28=1
- libxcb=1.12=1
- libxml2=2.9.5=0
- matplotlib=2.1.0=py36_1
- multidict=2.1.4=py36_0
- ncurses=5.9=10
- openssl=1.0.2l=0
- pandas=0.21.0=py36_0
- paramiko=2.3.1=py_0
- patsy=0.4.1=py36_0
- pcre=8.39=0
- pip=9.0.1=py36_0
- psutil=5.4.0=py36_0
- pyasn1=0.3.7=py_0
- pycparser=2.18=py36_0
- pynacl=1.1.2=py36_0
- pyopenssl=17.2.0=py36_0
- pyparsing=2.2.0=py36_0
- pyqt=5.6.0=py36_4
- pysocks=1.6.7=py36_0
- python=3.6.3=0
- python-dateutil=2.6.1=py36_0
- pytz=2017.3=py_1
- pyyaml=3.12=py36_1
- qt=5.6.2=3
- ratelimiter=1.2.0=py36_0
- readline=6.2=0
- requests=2.18.4=py36_1
- seaborn=0.8.1=py36_0
- setuptools=36.6.0=py36_1
- sip=4.18=py36_1
- six=1.11.0=py36_1
- sqlite=3.13.0=1
- statsmodels=0.8.0=py36_0
- tk=8.5.19=2
- tornado=4.5.2=py36_0
- urllib3=1.22=py36_0
- wheel=0.30.0
- wrapt=1.10.11=py36_0
- xorg-libxau=1.0.8=3
- xorg-libxdmcp=1.1.2=3
- xz=5.2.3=0
- yaml=0.1.6=0
- yarl=0.10.0=py36_0
- zlib=1.2.8=3
- bcrypt=3.1.3=py36_0
- libgcc=5.2.0=0
- libgfortran=3.0.0=1
- mkl=2017.0.3=0
- numpy=1.13.1=py36_0
- scipy=0.19.1=np113py36_0
- pip:
- backports.functools-lru-cache==1.4
- aioeasywebdav=2.2.0
- aiohttp=3.5.4
- appdirs=1.4.3
- asn1crypto=0.24.0
- async-timeout=3.0.1
- attrs=19.1.0
- bcrypt=3.1.4
- boto3=1.9.138
- botocore=1.12.138
- ca-certificates=2019.3.9
- cachetools=2.1.0
- cairo=1.16.0
- certifi=2019.3.9
- cffi=1.12.3
- chardet=3.0.4
- click=7.0
- configargparse=0.13.0
- cryptography=2.6.1
- datrie=0.7.1
- decorator=4.4.0
- docutils=0.14
- dropbox=9.2.0
- expat=2.2.5
- filechunkio=1.8
- fontconfig=2.13.1
- freetype=2.10.0
- ftputil=3.4
- gettext=0.19.8.1
- gitdb2=2.0.5
- gitpython=2.1.11
- glib=2.58.3
- google-api-core=1.10.0
- google-auth=1.6.3
- google-cloud-core=0.29.1
- google-cloud-storage=1.15.0
- google-resumable-media=0.3.2
- googleapis-common-protos=1.5.9
- graphite2=1.3.13
- graphviz=2.38.0
- harfbuzz=2.4.0
- icu=58.2
- idna=2.8
- idna_ssl=1.1.0
- jinja2=2.10.1
- jmespath=0.9.4
- jpeg=9c
- jsonschema=3.0.1
- libblas=3.8.0
- libcblas=3.8.0
- libffi=3.2.1
- libgcc-ng=8.2.0
- libgfortran=3.0.0
- libiconv=1.15
- liblapack=3.8.0
- libpng=1.6.37
- libprotobuf=3.7.1
- libstdcxx-ng=8.2.0
- libtiff=4.0.10
- libtool=2.4.6
- libuuid=2.32.1
- libxcb=1.13
- libxml2=2.9.9
- markupsafe=1.1.1
- multidict=4.5.2
- ncurses=6.1
- networkx=2.3
- numpy=1.16.3
- openblas=0.3.5
- openssl=1.1.1b
- pandas=0.24.2
- pango=1.40.14
- paramiko=2.4.2
- pcre=8.41
- pip=19.1
- pixman=0.34.0
- prettytable=0.7.2
- protobuf=3.7.1
- psutil=5.6.2
- pthread-stubs=0.4
- pyasn1=0.4.4
- pyasn1-modules=0.2.4
- pycparser=2.19
- pyfaidx=0.5.0
- pygraphviz=1.5
- pynacl=1.3.0
- pyopenssl=19.0.0
- pyrsistent=0.15.1
- pysftp=0.2.9
- pysocks=1.6.8
- python=3.6.7
- python-dateutil=2.8.0
- python-irodsclient=0.7.0
- pytz=2019.1
- pyyaml=5.1
- ratelimiter=1.2.0
- readline=7.0
- requests=2.21.0
- rsa=3.4.2
- s3transfer=0.2.0
- setuptools=41.0.1
- six=1.12.0
- smmap2=2.0.5
- snakemake=5.4.5
- snakemake-minimal=5.4.5
- sqlite=3.26.0
- tk=8.6.9
- typing_extensions=3.7.2
- urllib3=1.24.2
- wheel=0.33.1
- wrapt=1.11.1
- xmlrunner=1.7.7
- xorg-kbproto=1.0.7
- xorg-libice=1.0.9
- xorg-libsm=1.2.3
- xorg-libx11=1.6.7
- xorg-libxau=1.0.9
- xorg-libxdmcp=1.1.3
- xorg-libxext=1.3.4
- xorg-libxpm=3.5.12
- xorg-libxrender=0.9.10
- xorg-libxt=1.1.5
- xorg-renderproto=0.11.1
- xorg-xextproto=7.3.0
- xorg-xproto=7.0.31
- xz=5.2.4
- yaml=0.1.7
- yarl=1.3.0
- zlib=1.2.11
snakemake==4.3.0
snakemake>=5.2.0
pyfaidx==0.5.0
click
\ No newline at end of file
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