Commit 13097276 authored by Sander Bollen's avatar Sander Bollen
Browse files

add cluster status in functional test yaml

parent 0112fcdb
Pipeline #2499 failed with stages
in 82 minutes and 26 seconds
......@@ -2,7 +2,9 @@
command: >-
bash -c '
snakemake --use-conda --conda-prefix ${CONDA_PREFIX} --jobs 100 -w 120
--cluster "sbatch --parsable" -r -p -s Snakefile -T
--cluster "sbatch --parsable"
--cluster-status "{PWD}/cluster/slurm-cluster-status/slurm-cluster-status.py"
-r -p -s Snakefile -T
--config JAVA=$(which java)
REFERENCE=${FUNCTIONAL_REF} GATK=${GATK_JAR}
DBSNP=${FUNCTIONAL_DBSNP}
......
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