Commits · 173bb2e6547c1fa4ee20ec5da98368522e18b887 · biowdl / tasks

Mar 18, 2022
- update changelog · 173bb2e6
  Cats authored 3 years ago
  
  173bb2e6
- run tabix if vcf index is missing in gridss · ac55982a
  Cats authored 3 years ago
  
  ac55982a
Jan 28, 2022
- add missing parameter_meta · f234b0e8
  Cats authored 3 years ago
  
  f234b0e8
Jan 27, 2022
- Merge pull request #298 from biowdl/sage · b13fd31b
  Cats authored 3 years ago
  
  Updates for WGSinCancerDiagnostics
  Unverified
  
  b13fd31b
- update healthchecker · fb91a024
  Cats authored 3 years ago
  
  fb91a024
Jan 26, 2022
- adress comments · bf4c1a3e
  Cats authored 3 years ago
  
  bf4c1a3e
- update scripts and changelog · 99215fdd
  Cats authored 3 years ago
  
  99215fdd
- Merge remote-tracking branch 'origin/develop' into sage · 73932097
  Cats authored 3 years ago
  
  73932097
Jan 19, 2022
- increase resources GRIDSS · 89a0324a
  Cats authored 3 years ago
  
  89a0324a
Dec 14, 2021
- Merge pull request #295 from biowdl/BIOWDL-576 · a56d2f18
  Ruben Vorderman authored 3 years ago
  
  Add sample position in array task, update parameter_meta for macs2.
  Unverified
  
  a56d2f18
- More correct evaluation of controlBams input · 019cbb96
  Ruben Vorderman authored 3 years ago
  
  019cbb96
- Update changelog · 17746ebb
  Ruben Vorderman authored 3 years ago
  
  17746ebb
- Add time minutes parameter · 24ef5634
  Ruben Vorderman authored 3 years ago
  
  24ef5634
- Add parameter_meta for macs2 · c21d27ff
  Ruben Vorderman authored 3 years ago
  
  c21d27ff
Dec 06, 2021
- Require 5 minutes · d970e689
  Ruben Vorderman authored 3 years ago
  
  d970e689
- Add sampleposition in array task · 86a24982
  Ruben Vorderman authored 3 years ago
  
  86a24982
Nov 26, 2021
- give dictionary and index to virusbreakend · 787ad56b
  Cats authored 3 years ago
  
  787ad56b
Nov 15, 2021
- make recovery sv vcf optional in purple · e9f3c5fd
  Cats authored 3 years ago
  
  e9f3c5fd
Nov 13, 2021
- gridss more memory · d3d20400
  Cats authored 3 years ago
  
  d3d20400
Nov 12, 2021
- change gridss runtime settings · 1a9a8058
  Cats authored 3 years ago
  
  1a9a8058
- use alternative gridss image for virusbreakend · f64bd536
  Cats authored 3 years ago
  
  f64bd536
- increase gridss memory · c9657636
  Cats authored 3 years ago
  
  c9657636
Nov 11, 2021
- increase memory gridss · f9ed6158
  Cats authored 3 years ago
  
  f9ed6158
Nov 10, 2021
- upgrade gridss to 2.12.2 · 7d1f9c92
  Cats authored 3 years ago
  
  7d1f9c92
Nov 09, 2021
- try version 2.11.1 for gridss · 0a1995df
  Cats authored 3 years ago
  
  0a1995df
Nov 08, 2021
- add img input for virusbreakend · 9e868dbc
  Cats authored 3 years ago
  
  9e868dbc
Oct 29, 2021
- Merge pull request #293 from leipzig/patch-1 · 933e473d
  Ruben Vorderman authored 3 years ago
  
  bump scatterregions container
  Unverified
  
  933e473d
Oct 28, 2021
- Merge pull request #1 from leipzig/patch-2 · a848ae1d
  Jeremy Leipzig authored 3 years ago
  
  Update CHANGELOG.md
  Unverified
  
  a848ae1d
- Update CHANGELOG.md · 8224e2cb
  Jeremy Leipzig authored 3 years ago
  
  Unverified
  
  8224e2cb
- Update chunked-scatter.wdl · 0932a62d
  Jeremy Leipzig authored 3 years ago
  
  Older container is not producing the necessary bed file
  Unverified
  
  0932a62d
- increase memory for sambamba markdup · c48f3bb7
  Cats authored 3 years ago
  
  c48f3bb7
Oct 01, 2021
- Merge pull request #292 from biowdl/famm-run · 68c56c9f
  Cats authored 3 years ago
  
  Famm run
  Unverified
  
  68c56c9f
- update changelog · 48f0c3eb
  cagaser authored 3 years ago
  
  48f0c3eb
Sep 30, 2021
- update CHANGELOG · 9d5972de
  cagaser authored 3 years ago
  
  9d5972de
- Merge branch 'develop' into famm-run · 54194a00
  cagaser authored 3 years ago
  
  54194a00
Sep 24, 2021
- adjust resource settings · a7a504e4
  Cats authored 3 years ago
  
  a7a504e4
- fix protect command with multiple doids · 15b12101
  Cats authored 3 years ago
  
  15b12101
Sep 17, 2021
- update bcftools.wdk · d76faa5a
  cedrick authored 3 years ago
  
  d76faa5a
Aug 23, 2021
- fix incorrect type · e8df466d
  Cats authored 3 years ago
  
  e8df466d
Aug 20, 2021
- update bedtools version for coverage · 26574bf2
  Cats authored 3 years ago
  
  26574bf2