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Commit e9f3c5fd authored by Cats's avatar Cats
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make recovery sv vcf optional in purple

parent d3d20400
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......@@ -648,8 +648,8 @@ task Purple {
File somaticVcf
File germlineVcf
File filteredSvVcf
File fullSvVcf
File fullSvVcfIndex
File? fullSvVcf
File? fullSvVcfIndex
File referenceFasta
File referenceFastaFai
File referenceFastaDict
......@@ -676,7 +676,7 @@ task Purple {
-somatic_vcf ~{somaticVcf} \
-germline_vcf ~{germlineVcf} \
-structural_vcf ~{filteredSvVcf} \
-sv_recovery_vcf ~{fullSvVcf} \
~{"-sv_recovery_vcf " + fullSvVcf} \
-circos /usr/local/bin/circos \
-ref_genome ~{referenceFasta} \
-driver_catalog \
......
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