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biowdl
tasks
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173bb2e6
Commit
173bb2e6
authored
3 years ago
by
Cats
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update changelog
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ac55982a
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CHANGELOG.md
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173bb2e6
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@@ -9,6 +9,8 @@ that users understand how the changes affect the new version.
-->
version 5.1.0-dev
---------------------------
+
The GRIDSS task will now run tabix separately if GRIDSS doesn't
produce a vcf index.
+
Added a task for SnpEff.
+
Adjusted runtime settings for sambamba Markdup.
+
Added a task for sambamba Flagstat.
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@@ -28,7 +30,7 @@ version 5.1.0-dev
+
Sage
+
VirusInterpreter
+
Added a task for VirusBreakend.
+
Added a task for GridssAnnotateVcfRepeatmasker.
+
Added a task for GridssAnnotateVcfRepeatmasker.
+
Bumped GRIDSS version to 2.12.2.
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Adjusted GRIDSS runtime settings.
+
Added optional inputs to GRIDSS:
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@@ -147,7 +149,7 @@ version 4.0.0
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Picard MergeVcf now uses compression level 1 by default.
+
bwa mem, bwa mem+kit and hisat2 have their samtools sort threads tweaked. The
number of threads is now related to the number of threads on the aligner.
Using more threads reduces the chance of the samtools sort pipe getting
Using more threads reduces the chance of the samtools sort pipe getting
blocked if it's full.
+
Renamed a few inputs in centrifuge.wdl, isoseq3.wdl, talon.wdl,
transcriptclean.wdl to be more descriptive.
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