Commits · f87e7caa2f14e0782e4cad760d2f7dc819949cdd · Mirrors / biopet.biopet

Sep 01, 2015
- Move generate indexes to own maven artifact · f87e7caa
  Peter van 't Hof authored 9 years ago
  
  f87e7caa
Aug 26, 2015
- fixed command · d876295b
  Peter van 't Hof authored 9 years ago
  
  d876295b
- Added option to suply fasta file as seperated fasta files · 7599da07
  Peter van 't Hof authored 9 years ago
  
  7599da07
Aug 18, 2015
- Fix tophat config · db8d9906
  Peter van 't Hof authored 9 years ago
  
  db8d9906
Aug 17, 2015
- Raise memory requirements for gmap_build · 9742b0ee
  Peter van 't Hof authored 9 years ago
  
  9742b0ee
- Added reference trait for tophat · 73990f01
  Peter van 't Hof authored 9 years ago
  
  73990f01
- Fix output file · fb2fc695
  Peter van 't Hof authored 9 years ago
  
  fb2fc695
- Changes ; to &&, is saver · 1a5a202c
  Peter van 't Hof authored 9 years ago
  
  1a5a202c
- fixed output dir of star · 6522adee
  Peter van 't Hof authored 9 years ago
  
  6522adee
- Changed output files · f101ac58
  Peter van 't Hof authored 9 years ago
  
  f101ac58
- Raise memory for bwa index · 2fa4a96d
  Peter van 't Hof authored 9 years ago
  
  2fa4a96d
- Added tophat to config · a1eee540
  Peter van 't Hof authored 9 years ago
  
  a1eee540
- Added star · 9fad1a2f
  Peter van 't Hof authored 9 years ago
  
  9fad1a2f
- Fixid output files · 77d57f95
  Peter van 't Hof authored 9 years ago
  
  77d57f95
Aug 15, 2015
- Fix output dir · d879ab26
  Peter van 't Hof authored 9 years ago
  
  d879ab26
- Added bowtie · fc3ef308
  Peter van 't Hof authored 9 years ago
  
  fc3ef308
- Added db to gmap/gsnap · 0b44a906
  Peter van 't Hof authored 9 years ago
  
  0b44a906
- Raise memory requirements · f0c197cd
  Peter van 't Hof authored 9 years ago
  
  f0c197cd
Aug 12, 2015
- Download of vep is now intermediate · bc675e49
  Peter van 't Hof authored 9 years ago
  
  bc675e49
- Added tabix step for CombineVariants · 62fb04fa
  Peter van 't Hof authored 9 years ago
  
  62fb04fa
- Fixed outputDir · 84e3a57e
  Peter van 't Hof authored 9 years ago
  
  84e3a57e
- Added vep and multiple dbsnp files · 03770ca1
  Peter van 't Hof authored 9 years ago
  
  03770ca1
- Adding write config file · f19ee689
  Peter van 't Hof authored 9 years ago
  
  f19ee689
Aug 11, 2015
- Added dbsnp download · 46427f07
  Peter van 't Hof authored 9 years ago
  
  46427f07
- Adding gmap_build · 6deb5726
  Peter van 't Hof authored 9 years ago
  
  6deb5726
- Code style · d6626c4e
  Peter van 't Hof authored 9 years ago
  
  d6626c4e
- Adding bwa index · 707992d7
  Peter van 't Hof authored 9 years ago
  
  707992d7
- Added md5sum job · 0c236ee5
  Peter van 't Hof authored 9 years ago
  
  0c236ee5
- Added createDict · 838eead1
  Peter van 't Hof authored 9 years ago
  
  838eead1
- Added faidx · 7b8f4dd5
  Peter van 't Hof authored 9 years ago
  
  7b8f4dd5
- Added download step · e32ecc0b
  Peter van 't Hof authored 9 years ago
  
  e32ecc0b
- Added basic extension for curl · 982769eb
  Peter van 't Hof authored 9 years ago
  
  982769eb
- First version of index build pipeline · b648ea62
  Peter van 't Hof authored 9 years ago
  
  b648ea62
Aug 04, 2015
- Merge branch 'fix-shade_version' into 'develop' · f402933f
  bow authored 9 years ago
  
  Upgrade shade plugin version See merge request !207
  f402933f
- Upgrade shade plugin version · 35b7f2ee
  Peter van 't Hof authored 9 years ago
  
  35b7f2ee
- Merge branch 'review-kraken' into 'develop' · 67ec1f2f
  bow authored 9 years ago
  
  Review kraken / gears See merge request !205
  67ec1f2f
Aug 03, 2015
- Fix gears in executables · 9d3bdc2a
  Peter van 't Hof authored 9 years ago
  
  9d3bdc2a
- Review changes · e667ee49
  Peter van 't Hof authored 9 years ago
  
  e667ee49
- Merge branch 'fix-readgroup' into 'develop' · 1658c07f
  bow authored 9 years ago
  
  Fix for #184 Fix for #184 See merge request !206
  1658c07f
- Merge branch 'feature-upgrade_queue_3.4' into 'develop' · 64c8de96
  bow authored 9 years ago
  
  Feature upgrade queue 3.4 see also #175 See merge request !203
  64c8de96