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Commit 0b44a906 authored by Peter van 't Hof's avatar Peter van 't Hof
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Added db to gmap/gsnap

parent f0c197cd
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/GenerateIndexes.scala
+ 2
− 2
View file @ 0b44a906
......@@ -167,8 +167,8 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
gmapBuild.db = genomeName
gmapBuild.fastaFiles ::= createLinks(gmapDir)
add(gmapBuild)
outputConfig += "gsnap" -> Map("dir" -> gmapBuild.dir.getAbsolutePath)
outputConfig += "gmap" -> Map("dir" -> gmapBuild.dir.getAbsolutePath)
outputConfig += "gsnap" -> Map("dir" -> gmapBuild.dir.getAbsolutePath, "db" -> genomeName)
outputConfig += "gmap" -> Map("dir" -> gmapBuild.dir.getAbsolutePath, "db" -> genomeName)
//TODO: Star index
......
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