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67ec1f2f

Commit 67ec1f2f authored 9 years ago by bow

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Merge branch 'review-kraken' into 'develop'

Review kraken / gears



See merge request !205

parents 1658c07f 9d3bdc2a

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protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala 1 addition, 1 deletion

.../nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala 26 additions, 35 deletions

.../scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala
public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala 5 additions, 5 deletions

...ala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala 300 additions, 2 deletions

...ain/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsTrait.scala 0 additions, 328 deletions

...cala/nl/lumc/sasc/biopet/pipelines/gears/GearsTrait.scala

with 332 additions and 371 deletions

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