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Commit f101ac58 authored by Peter van 't Hof's avatar Peter van 't Hof
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Changed output files

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2Build.scala
+ 2
− 2
View file @ f101ac58
......@@ -26,8 +26,8 @@ class Bowtie2Build(val root: Configurable) extends BiopetCommandLineFunction {
override def defaultCoreMemory = 15.0
override def beforeGraph: Unit = {
outputFiles ::= new File(reference.getParentFile, baseName + ".1.ebwt")
outputFiles ::= new File(reference.getParentFile, baseName + ".2.ebwt")
outputFiles ::= new File(reference.getParentFile, baseName + ".1.bt2")
outputFiles ::= new File(reference.getParentFile, baseName + ".2.bt2")
}
def cmdLine = required("cd", reference.getParentFile) + "; " +
......
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