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fc3ef308

Commit fc3ef308 authored 9 years ago by Peter van 't Hof

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Added bowtie

parent 0b44a906

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Changes 6

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie.scala 1 addition, 2 deletions

.../scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2Build.scala 28 additions, 0 deletions

.../nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2Build.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/BowtieBuild.scala 28 additions, 0 deletions

...a/nl/lumc/sasc/biopet/extensions/bowtie/BowtieBuild.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/GenerateIndexes.scala 12 additions, 1 deletion

...scala/nl/lumc/sasc/biopet/pipelines/GenerateIndexes.scala
public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala 1 addition, 0 deletions

...scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala 1 addition, 0 deletions

...a/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala

with 71 additions and 3 deletions

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