Commits · f3343df96049bbc0a8709932381f7bec97927c60 · Mirrors / biopet.biopet

13 Sep, 2015 7 commits
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored Sep 13, 2015
  
  f3343df9
- Delete duplicate resources · 3bf08752
  Peter van 't Hof authored Sep 13, 2015
  
  3bf08752
- Moved to other package · 8d6bb0f1
  Peter van 't Hof authored Sep 13, 2015
  
  8d6bb0f1
- Fix compile errors · 706ca942
  Peter van 't Hof authored Sep 13, 2015
  
  706ca942
- Rscript usable without core now · 7d112c68
  Peter van 't Hof authored Sep 13, 2015
  
  7d112c68
- Move abstract commandlines function for Rscript and Python · c4c8292b
  Peter van 't Hof authored Sep 13, 2015
  
  c4c8292b
- Move test resources · 806133cd
  Peter van 't Hof authored Sep 13, 2015
  
  806133cd
11 Sep, 2015 1 commit
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored Sep 11, 2015
  
  eb97957f
10 Sep, 2015 16 commits
- Moved core sources · f4b5230c
  Peter van 't Hof authored Sep 10, 2015
  
  f4b5230c
- Move utils tests to utils · 7854fb6e
  Peter van 't Hof authored Sep 10, 2015
  
  7854fb6e
- Moved config to utils · a81bce67
  Peter van 't Hof authored Sep 10, 2015
  
  a81bce67
- Fix dependency · 10e09e28
  Peter van 't Hof authored Sep 10, 2015
  
  10e09e28
- Add dependencies · 735d30d7
  Peter van 't Hof authored Sep 10, 2015
  
  735d30d7
- Add dependencies · 6f949fc7
  Peter van 't Hof authored Sep 10, 2015
  
  6f949fc7
- Moving utils · 5a381b3d
  Peter van 't Hof authored Sep 10, 2015
  
  5a381b3d
- Adding utils module · 1028f4da
  Peter van 't Hof authored Sep 10, 2015
  
  1028f4da
- Generate new module · e5cca642
  Peter van 't Hof authored Sep 10, 2015
  
  e5cca642
- Move executable classes out of the core · 3327c0c8
  Peter van 't Hof authored Sep 10, 2015
  
  3327c0c8
- Merge branch 'tooltests' into 'develop' · b7ae99c2
  Wai Yi Leung authored Sep 10, 2015
```
Tooltests

Fixes #188, #196  and #200 

See merge request !224
```
  b7ae99c2
- Adding -o option to hide output from stdout · 9c9edf13
  Peter van 't Hof authored Sep 10, 2015
  
  9c9edf13
- Capture stderr · 5f0b7d9a
  Peter van 't Hof authored Sep 10, 2015
  
  5f0b7d9a
- Redirecting output to a file · e683889c
  Peter van 't Hof authored Sep 10, 2015
  
  e683889c
- Redirecting output to a file · 7c3a9d09
  Peter van 't Hof authored Sep 10, 2015
  
  7c3a9d09
- Added -o option · a386583c
  Peter van 't Hof authored Sep 10, 2015
  
  a386583c
09 Sep, 2015 16 commits
- More compact help text · cb3dfee1
  Peter van 't Hof authored Sep 09, 2015
  
  cb3dfee1
- Adding output file, output not to stdout anymore · d0887e43
  Peter van 't Hof authored Sep 09, 2015
  
  d0887e43
- Output to a file, no output to stdout anymore · cf11d4ac
  Peter van 't Hof authored Sep 09, 2015
  
  cf11d4ac
- Style changes · 07d09eb4
  Peter van 't Hof authored Sep 09, 2015
  
  07d09eb4
- Add output arg to sampletsvtojson · 3265843e
  Peter van 't Hof authored Sep 09, 2015
  
  3265843e
- Add output arg to biopet flagstat · 6a83d167
  Peter van 't Hof authored Sep 09, 2015
  
  6a83d167
- Fixed arg · f2d40822
  Peter van 't Hof authored Sep 09, 2015
  
  f2d40822
- Simplify method · 0ed7ca34
  Peter van 't Hof authored Sep 09, 2015
  
  0ed7ca34
- Adding more AnyVal for better support for other types · 7d6eb6fb
  Peter van 't Hof authored Sep 09, 2015
  
  7d6eb6fb
- Possible to change output of seqstat to a file instead of stdout · ed7e9588
  Peter van 't Hof authored Sep 09, 2015
  
  ed7e9588
- Change vars to vals, possible because method 'addTagresultToTaglib' is now changed · 1c155c9b
  Peter van 't Hof authored Sep 09, 2015
  
  1c155c9b
- Change logging to logger.info · 9b465609
  Peter van 't Hof authored Sep 09, 2015
  
  9b465609
- Fix ode style · a32bc102
  Peter van 't Hof authored Sep 09, 2015
  
  a32bc102
- Auto style fixes · 782140f5
  Sander Bollen authored Sep 09, 2015
  
  782140f5
- finishing up VcfStatsTEst · e8b087a1
  Sander Bollen authored Sep 09, 2015
  
  e8b087a1
- add testCheckGeneral · 74a7b056
  Sander Bollen authored Sep 09, 2015
  
  74a7b056