Commit cb3dfee1 authored by Peter van 't Hof's avatar Peter van 't Hof

More compact help text

parent d0887e43
......@@ -186,50 +186,14 @@ object VcfStats extends ToolCommand {
c.copy(generalWiggle = x :: c.generalWiggle, writeBinStats = true)
} validate {
x => if (generalWiggleOptions.contains(x)) success else failure(s"""Nonexistent field $x""")
} text
"""
|Create a wiggle track with bin size <binSize> for any of the following statistics:
|Total
|Biallelic
|ComplexIndel
|Filtered
|FullyDecoded
|Indel
|Mixed
|MNP
|MonomorphicInSamples
|NotFiltered
|PointEvent
|PolymorphicInSamples
|SimpleDeletion
|SimpleInsertion
|SNP
|StructuralIndel
|Symbolic
|SymbolicOrSV
|Variant
""".stripMargin
} text s"""Create a wiggle track with bin size <binSize> for any of the following statistics:
|${generalWiggleOptions.mkString(", ")}""".stripMargin
opt[String]("genotypeWiggle") unbounded () action { (x, c) =>
c.copy(genotypeWiggle = x :: c.genotypeWiggle, writeBinStats = true)
} validate {
x => if (genotypeWiggleOptions.contains(x)) success else failure(s"""Non-existent field $x""")
} text
"""
|Create a wiggle track with bin size <binSize> for any of the following genotype fields:
|Total
|Het
|HetNonRef
|Hom
|HomRef
|HomVar
|Mixed
|NoCall
|NonInformative
|Available
|Called
|Filtered
|Variant
""".stripMargin
} text s"""Create a wiggle track with bin size <binSize> for any of the following genotype fields:
|${genotypeWiggleOptions.mkString(", ")}""".stripMargin
}
/**
......
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