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biopet.biopet
Commits
7854fb6e
Commit
7854fb6e
authored
Sep 10, 2015
by
Peter van 't Hof
Browse files
Move utils tests to utils
parent
a81bce67
Changes
9
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public/biopet-utils/pom.xml
View file @
7854fb6e
...
...
@@ -13,6 +13,24 @@
<dependencies>
<dependency>
<groupId>
org.testng
</groupId>
<artifactId>
testng
</artifactId>
<version>
6.8
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
org.mockito
</groupId>
<artifactId>
mockito-all
</artifactId>
<version>
1.9.5
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
org.scalatest
</groupId>
<artifactId>
scalatest_2.10
</artifactId>
<version>
2.2.1
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
log4j
</groupId>
<artifactId>
log4j
</artifactId>
...
...
public/biopet-utils/src/test/resources/log4j.properties
0 → 100644
View file @
7854fb6e
#
# Biopet is built on top of GATK Queue for building bioinformatic
# pipelines. It is mainly intended to support LUMC SHARK cluster which is running
# SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
# should also be able to execute Biopet tools and pipelines.
#
# Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center
#
# Contact us at: sasc@lumc.nl
#
# A dual licensing mode is applied. The source code within this project that are
# not part of GATK Queue is freely available for non-commercial use under an AGPL
# license; For commercial users or users who do not want to follow the AGPL
# license, please contact us to obtain a separate license.
#
# Set root logger level to DEBUG and its only appender to A1.
log4j.rootLogger
=
ERROR, A1
# A1 is set to be a ConsoleAppender.
log4j.appender.A1
=
org.apache.log4j.ConsoleAppender
# A1 uses PatternLayout.
log4j.appender.A1.layout
=
org.apache.log4j.PatternLayout
log4j.appender.A1.layout.ConversionPattern
=
%-5p [%d] [%C{1}] - %m%n
\ No newline at end of file
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/ConfigUtilsTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/ConfigUtilsTest.scala
View file @
7854fb6e
File moved
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/PackageTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/PackageTest.scala
View file @
7854fb6e
File moved
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/config/ConfigTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/config/ConfigTest.scala
View file @
7854fb6e
File moved
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/config/ConfigValueTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/config/ConfigValueTest.scala
View file @
7854fb6e
File moved
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/config/ConfigurableTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/config/ConfigurableTest.scala
View file @
7854fb6e
File moved
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordListTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordListTest.scala
View file @
7854fb6e
File moved
public/biopet-
framework
/src/test/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordTest.scala
→
public/biopet-
utils
/src/test/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordTest.scala
View file @
7854fb6e
File moved
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