Move executable classes out of the core

protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala → protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutableProtected.scala

@@ -3,7 +3,9 @@
  * LUMC. Please refer to https://git.lumc.nl/biopet/biopet/wikis/home for instructions
  * on how to use this protected part of biopet or contact us at sasc@lumc.nl
  */
-package nl.lumc.sasc.biopet.core
+package nl.lumc.sasc.biopet
+
+import nl.lumc.sasc.biopet.core.{BiopetExecutable, MainCommand}
 
 object BiopetExecutableProtected extends BiopetExecutable {
   def pipelines: List[MainCommand] = BiopetExecutablePublic.pipelines ::: List(

public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala → public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala

@@ -13,7 +13,9 @@
  * license; For commercial users or users who do not want to follow the AGPL
  * license, please contact us to obtain a separate license.
  */
-package nl.lumc.sasc.biopet.core
+package nl.lumc.sasc.biopet
+
+import nl.lumc.sasc.biopet.core.{BiopetExecutable, MainCommand}
 
 object BiopetExecutablePublic extends BiopetExecutable {
   def publicPipelines: List[MainCommand] = List(