Commit d0887e43 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Adding output file, output not to stdout anymore

parent cf11d4ac
......@@ -54,7 +54,9 @@ class BiopetFlagstatTest extends TestNGSuite with MockitoSugar with Matchers {
@Test
def testMain() = {
main(Array("-I", bam.getAbsolutePath))
//TODO: Test output file
val output = File.createTempFile("testMain", ".biopetflagstat")
main(Array("-I", bam.getAbsolutePath, "-o", output.toString))
}
}
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