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biopet.biopet
Commits
8d6bb0f1
Commit
8d6bb0f1
authored
Sep 13, 2015
by
Peter van 't Hof
Browse files
Moved to other package
parent
706ca942
Changes
20
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public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/BastyGenerateFasta.scala
View file @
8d6bb0f1
...
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@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
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public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/BedToInterval.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/BedToInterval.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/BedtoolsCoverageToCounts.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/BiopetFlagstat.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSplitter.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/FastqSplitter.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/FastqSync.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/MergeAlleles.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/MergeTables.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/MergeTables.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/MpileupToVcf.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/MpileupToVcf.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/PrefixFastq.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/SageCountFastq.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/SageCountFastq.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/SageCreateLibrary.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/SageCreateLibrary.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/SageCreateTagCounts.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/SageCreateTagCounts.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/SeqStat.scala
View file @
8d6bb0f1
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/SquishBed.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/SquishBed.scala
View file @
8d6bb0f1
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/VcfFilter.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/VcfFilter.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/VcfStats.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/VcfWithVcf.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/VepNormalizer.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/VepNormalizer.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
→
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/
extensions/
tools/WipeReads.scala
View file @
8d6bb0f1
...
...
@@ -13,7 +13,7 @@
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc.biopet.tools
package
nl.lumc.sasc.biopet.
extensions.
tools
import
java.io.File
...
...
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