Commits · a5bf52fd5524f73a2bb5083ca410bc9fd4f24356 · Mirrors / biopet.biopet

Feb 01, 2016
- Added test on main method · 162f02ed
  Peter van 't Hof authored 9 years ago
  
  162f02ed
- Added more testing · c7d28c03
  Peter van 't Hof authored 9 years ago
  
  c7d28c03
Jan 29, 2016
- Added testing on Count classes · cc0f5341
  Peter van 't Hof authored 9 years ago
  
  cc0f5341
- Added basic tests · 03abff03
  Peter van 't Hof authored 9 years ago
  
  03abff03
- fix code warnings · 33aa9cd8
  Peter van 't Hof authored 9 years ago
  
  33aa9cd8
- Fixed scope · 62ff2fb2
  Peter van 't Hof authored 9 years ago
  
  62ff2fb2
Jan 28, 2016
- Added meta exons counts · 15df54b3
  Peter van 't Hof authored 9 years ago
  
  15df54b3
Jan 27, 2016
- Fix code warnings · 319f9274
  Peter van 't Hof authored 9 years ago
  
  319f9274
- Fixed createMetaExonCounts method · 9cae3390
  Peter van 't Hof authored 9 years ago
  
  9cae3390
- Combine overlapping genes in 1 thread · 8eae094a
  Peter van 't Hof authored 9 years ago
  
  8eae094a
- Give mergeTables a extension · 0e7a025e
  Peter van 't Hof authored 9 years ago
  
  0e7a025e
- Added columnName to mergeTables · ddfa3aac
  Peter van 't Hof authored 9 years ago
  
  ddfa3aac
Jan 26, 2016
- Fixed single exon transcripts · d9410da9
  Peter van 't Hof authored 9 years ago
  
  d9410da9
Jan 25, 2016
- Optimize imports · 4024e04f
  Peter van 't Hof authored 9 years ago
  
  4024e04f
Jan 23, 2016
- Added transcript counts · 293ee7bf
  Peter van 't Hof authored 9 years ago
  
  293ee7bf
- Add documentation · 7352807d
  Peter van 't Hof authored 9 years ago
  
  7352807d
Jan 22, 2016
- Added output files · 01be4515
  Peter van 't Hof authored 9 years ago
  
  01be4515
- Added gene exon and gene intron counts · b2718337
  Peter van 't Hof authored 9 years ago
  
  b2718337
- Added refflat support for base counting · 32adeb5e
  Peter van 't Hof authored 9 years ago
  
  32adeb5e
- Start on basecounter · 9428f738
  Peter van 't Hof authored 9 years ago
  
  9428f738
Jan 11, 2016
- Merge bed records · 7bedb39b
  Peter van 't Hof authored 9 years ago
  
  7bedb39b
- Improved logging · 798f296b
  Peter van 't Hof authored 9 years ago
  
  798f296b
Dec 29, 2015
- Fix code warning · 1cdd1970
  Peter van 't Hof authored 9 years ago
  
  1cdd1970
- Simplify write step · 517d8d61
  Peter van 't Hof authored 9 years ago
  
  517d8d61
- Adding status logging · ed5a234d
  Peter van 't Hof authored 9 years ago
  
  ed5a234d
Dec 28, 2015
- Fix count fastq · a14358bf
  Peter van 't Hof authored 9 years ago
  
  a14358bf
Dec 18, 2015
- Added tool for merging otu maps · 0b1fec3f
  Peter van 't Hof authored 9 years ago
  
  0b1fec3f
- Added properties for debuging · d6694b38
  Peter van 't Hof authored 9 years ago
  
  d6694b38
Nov 26, 2015
- changes in tool, since the checking for samples starting with a number went wrong. · 0b6db331
  Sander van der Zeeuw authored 9 years ago
  
  0b6db331
Nov 24, 2015
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
Nov 19, 2015
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
- Fixed license headers · fceb39a9
  Peter van 't Hof authored 9 years ago
  
  fceb39a9
Nov 02, 2015
- changes in gsnap piping and fix bug in fastqsync · 0a897753
  Sander van der Zeeuw authored 9 years ago
  
  0a897753
Oct 29, 2015
- Fixed summary file name · 2f92eb6d
  Peter van 't Hof authored 9 years ago
  
  2f92eb6d
Oct 28, 2015
- Adding Scaladocs to KrakenReportToJson and remove redundant code · 4cb2adf1
  Wai Yi Leung authored 9 years ago
  
  4cb2adf1
- Fixes for the comments made in the ticket #241 · 1b673dfa
  Wai Yi Leung authored 9 years ago
  
  1b673dfa
Oct 27, 2015
- Code style fixes · 41eade8b
  Peter van 't Hof authored 9 years ago
  
  41eade8b
Oct 23, 2015
- fix compile error · 035f43f7
  Sander Bollen authored 9 years ago
  
  035f43f7