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Commit 33aa9cd8 authored by Peter van 't Hof's avatar Peter van 't Hof
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fix code warnings

parent c294fbef
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public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BaseCounter.scala
+ 3
− 3
View file @ 33aa9cd8
......@@ -294,9 +294,9 @@ object BaseCounter extends ToolCommand {
for (record <- bamReader.queryOverlapping(genes.head.getContig, start, end) if !record.getNotPrimaryAlignmentFlag) {
counts.foreach { case (gene, count) => count.addRecord(record, samRecordStrand(record, gene)) }
metaExons.foreach(_._2.addRecord(record, true))
plusMetaExons.foreach(_._2.addRecord(record, samRecordStrand(record, true)))
minMetaExons.foreach(_._2.addRecord(record, samRecordStrand(record, false)))
metaExons.foreach(_._2.addRecord(record, sense = true))
plusMetaExons.foreach(_._2.addRecord(record, samRecordStrand(record, strand = true)))
minMetaExons.foreach(_._2.addRecord(record, samRecordStrand(record, strand = false)))
}
bamReader.close()
......
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