Commit ed5a234d authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Adding status logging

parent a14358bf
......@@ -55,6 +55,7 @@ object SageCountFastq extends ToolCommand {
if (counts.contains(seq)) counts(seq) += 1
else counts += (seq -> 1)
count += 1
if (count % 1000000 == 0) logger.info(count + " sequences done")
}
reader.close()
......
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