Commits · 9712e1d1bd56f66b2c08262af572cbc5f7f300ff · Mirrors / biopet.biopet

Feb 08, 2016
- fixed merge table job · 9712e1d1
  Peter van 't Hof authored 9 years ago
  
  9712e1d1
Feb 02, 2016
- Fixed summary jobs · 7eb2bf8d
  Peter van 't Hof authored 9 years ago
  
  7eb2bf8d
Jan 29, 2016
- wgs and rna metrics now got config value to enable/disable them · 64134d46
  Peter van 't Hof authored 9 years ago
  
  64134d46
- switch to core rscript extension · 326a21e5
  Peter van 't Hof authored 9 years ago
  
  326a21e5
- Added meta exon counts to pipeline · c294fbef
  Peter van 't Hof authored 9 years ago
  
  c294fbef
Jan 28, 2016
- Remove old unused code · 3cccfa85
  Peter van 't Hof authored 9 years ago
  
  3cccfa85
- Reformat · 90e97bb1
  Peter van 't Hof authored 9 years ago
  
  90e97bb1
- Fixed gentrap tests · adf2e18f
  Peter van 't Hof authored 9 years ago
  
  adf2e18f
Jan 27, 2016
- Give mergeTables a extension · 0e7a025e
  Peter van 't Hof authored 9 years ago
  
  0e7a025e
- fixed strandProtocol · 74d27805
  Peter van 't Hof authored 9 years ago
  
  74d27805
Jan 26, 2016
- Disabled countType by default · 6b636bb7
  Peter van 't Hof authored 9 years ago
  
  6b636bb7
Jan 25, 2016
- Fixed htseq-count · 95ebd1c9
  Peter van 't Hof authored 9 years ago
  
  95ebd1c9
- Implemented LazyCheck · 175a5f6a
  Peter van 't Hof authored 9 years ago
  
  175a5f6a
- Fixed config conversions · a43106b2
  Peter van 't Hof authored 9 years ago
  
  a43106b2
- Added tables and heatmaps to basecounter · 9184d047
  Peter van 't Hof authored 9 years ago
  
  9184d047
- Added tables and heatmaps to summary · dd71e82b
  Peter van 't Hof authored 9 years ago
  
  dd71e82b
- Remove old code · 20fe80d7
  Peter van 't Hof authored 9 years ago
  
  20fe80d7
- Implement baseCounter in pipeline · 6d9cf7ee
  Peter van 't Hof authored 9 years ago
  
  6d9cf7ee
- Optimize imports · 4024e04f
  Peter van 't Hof authored 9 years ago
  
  4024e04f
Jan 20, 2016
- Disabled uncompilble code · dc31e3e8
  Peter van 't Hof authored 9 years ago
  
  dc31e3e8
- Move Bam2Wig to multisample mapping · 946e1e77
  Peter van 't Hof authored 9 years ago
  
  946e1e77
- Change ro preProcessBam · 4b084127
  Peter van 't Hof authored 9 years ago
  
  4b084127
- Major upgrade to gentrap class · 230ce86b
  Peter van 't Hof authored 9 years ago
  
  230ce86b
- Added cufflinks · de64cd6b
  Peter van 't Hof authored 9 years ago
  
  de64cd6b
- Fixed typo · 31720a62
  Peter van 't Hof authored 9 years ago
  
  31720a62
- Added htseqCount job · e4d8e06c
  Peter van 't Hof authored 9 years ago
  
  e4d8e06c
- Added files to summary · af59b702
  Peter van 't Hof authored 9 years ago
  
  af59b702
- Added heatmap plot · 1d1a6256
  Peter van 't Hof authored 9 years ago
  
  1d1a6256
- Added general merging · d411daac
  Peter van 't Hof authored 9 years ago
  
  d411daac
- Move script and init to main trait · 958e6ba4
  Peter van 't Hof authored 9 years ago
  
  958e6ba4
Jan 15, 2016
- add varscan to shiva variantcallers · 559881ed
  Sander van der Zeeuw authored 9 years ago
  
  559881ed
Jan 12, 2016
- Added empty implementations · 4b63e57c
  Peter van 't Hof authored 9 years ago
  
  4b63e57c
- Fix metrics · b93f2642
  Peter van 't Hof authored 9 years ago
  
  b93f2642
- Fix reference tag · 81d36084
  Peter van 't Hof authored 9 years ago
  
  81d36084
- Added html report to pipeline · 189a25d4
  Peter van 't Hof authored 9 years ago
  
  189a25d4
- Fixed report types · 9034e179
  Peter van 't Hof authored 9 years ago
  
  9034e179
Jan 11, 2016
- Change gentrap report to multisample mapping report · 56766d98
  Peter van 't Hof authored 9 years ago
  
  56766d98
- Disable report · 621ccaf4
  Peter van 't Hof authored 9 years ago
  
  621ccaf4
Jan 08, 2016
- Fixed rna metrics · 565f3979
  Peter van 't Hof authored 9 years ago
  
  565f3979
Jan 06, 2016
- Switch to multisample mapping · d9c88772
  Peter van 't Hof authored 9 years ago
  
  d9c88772