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Commit af59b702 authored by Peter van 't Hof's avatar Peter van 't Hof
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Added files to summary

parent 1d1a6256
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......@@ -66,7 +66,8 @@ trait Measurement extends SummaryQScript with Reference { qscript: QScript =>
def summarySettings: Map[String, Any] = Map()
/** File to put in the summary for thie pipeline */
def summaryFiles: Map[String, File] = Map()
def summaryFiles: Map[String, File] = Map("merged_table" -> mergedCountFile, "heatmap" -> heatpMap) ++
bamFiles.map { case (id, file) => s"input_bam_$id" -> file}
/** Name of summary output file */
def summaryFile: File = new File(outputDir, s"$name.summary.json")
......
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