Commit 9712e1d1 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

fixed merge table job

parent 54219bcb
......@@ -63,8 +63,8 @@ object BammetricsReport extends ReportBuilder {
val insertsizeMetrics = summary.getValue(sampleId, libId, metricsTag, "stats", "CollectInsertSizeMetrics", "metrics") match {
case Some(None) => false
case Some(_) => true
case _ => false
case Some(_) => true
case _ => false
}
val targets = (
......
......@@ -44,7 +44,7 @@ trait Measurement extends SummaryQScript with Reference { qscript: QScript =>
fileExtension: String,
args: MergeArgs = mergeArgs): Unit = {
add(MergeTables(this, countFiles, outputFile,
args.idCols, args.valCol, args.numHeaderLines, args.fallback))
args.idCols, args.valCol, args.numHeaderLines, args.fallback, fileExtension = Some(fileExtension)))
extraSummaryFiles += s"${name}_table" -> outputFile
}
......
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