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6d9cf7ee

Commit 6d9cf7ee authored 9 years ago by Peter van 't Hof

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Implement baseCounter in pipeline

parent 4024e04f

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public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala 3 additions, 6 deletions

...scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/BaseCounts.scala 30 additions, 0 deletions

...c/sasc/biopet/pipelines/gentrap/measures/BaseCounts.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/BasesPerGene.scala 0 additions, 14 deletions

...sasc/biopet/pipelines/gentrap/measures/BasesPerGene.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/CufflinksMeasurement.scala 16 additions, 16 deletions

...pet/pipelines/gentrap/measures/CufflinksMeasurement.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/FragmentsPerExon.scala 3 additions, 2 deletions

.../biopet/pipelines/gentrap/measures/FragmentsPerExon.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/FragmentsPerGene.scala 24 additions, 0 deletions

.../biopet/pipelines/gentrap/measures/FragmentsPerGene.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/measures/Measurement.scala 10 additions, 22 deletions

.../sasc/biopet/pipelines/gentrap/measures/Measurement.scala

with 86 additions and 60 deletions

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