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Commit dc31e3e8 authored by Peter van 't Hof's avatar Peter van 't Hof
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Disabled uncompilble code

parent 946e1e77
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......@@ -71,6 +71,7 @@ trait CufflinksProducer {
job.input = alnFile
job.library_type = Option(strandedness)
job.output_dir = new File(sampleDir, name)
/*
job.GTF = cuffType match {
case CufflinksStrict => pipeline.annotationGtf
case otherwise => None
......@@ -79,6 +80,7 @@ trait CufflinksProducer {
case CufflinksGuided => pipeline.annotationGtf
case otherwise => None
}
*/
job
}
......
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