Commits · 96efe61efd62ec08d572503eed1de4cdad8485a6 · Mirrors / biopet.biopet

Jan 08, 2016
- Style changes · 96efe61e
  Peter van 't Hof authored 9 years ago
  
  96efe61e
- Fix output file for tophat step · e3fd97af
  Peter van 't Hof authored 9 years ago
  
  e3fd97af
Jan 06, 2016
- Fixed typo · fa4b60f8
  Peter van 't Hof authored 9 years ago
  
  fa4b60f8
- Moved summaryFile · 4143a145
  Peter van 't Hof authored 9 years ago
  
  4143a145
Jan 05, 2016
- Fix temp files in mapping · 748dd6c2
  Peter van 't Hof authored 9 years ago
  
  748dd6c2
Dec 29, 2015
- Move Bowtie2 to package bowtie · 76383bf1
  Peter van 't Hof authored 9 years ago
  
  76383bf1
Dec 28, 2015
- Added whitespace · 28a34d76
  Peter van 't Hof authored 9 years ago
  
  28a34d76
- Added md5 check · 4fd461e8
  Peter van 't Hof authored 9 years ago
  
  4fd461e8
- Fixed intermediate files · 330377f0
  Peter van 't Hof authored 9 years ago
  
  330377f0
- Fix format · 4078fca2
  Peter van 't Hof authored 9 years ago
  
  4078fca2
- Fixed output dir · f2c27a88
  Peter van 't Hof authored 9 years ago
  
  f2c27a88
- Fixed traits · 7accfa72
  Peter van 't Hof authored 9 years ago
  
  7accfa72
Dec 22, 2015
- Switch shiva to multisample mapping · b1e56b71
  Peter van 't Hof authored 9 years ago
  
  b1e56b71
Dec 21, 2015
- Added files to summary · 31a835a1
  Peter van 't Hof authored 9 years ago
  
  31a835a1
- Add bam linking · 7501f792
  Peter van 't Hof authored 9 years ago
  
  7501f792
- Adding merge strategies · 10d0ce96
  Peter van 't Hof authored 9 years ago
  
  10d0ce96
Dec 18, 2015
- Init setup for multisample mapping pipeline · a416a47b
  Peter van 't Hof authored 9 years ago
  
  a416a47b
- Change back to get · 7e542a61
  Peter van 't Hof authored 9 years ago
  
  7e542a61
- More fail safe · a6d7e825
  Peter van 't Hof authored 9 years ago
  
  a6d7e825
- Simplify · 8d9d194b
  Peter van 't Hof authored 9 years ago
  
  8d9d194b
Nov 26, 2015
- Fix bowtie2 readgroup · ac61c9dd
  Wai Yi Leung authored 9 years ago
  
  ac61c9dd
Nov 25, 2015
- Style reformat after compiling · cb684be5
  Wai Yi Leung authored 9 years ago
  
  cb684be5
- Add bowtie2 to Mapping (and add wrapper for bowtie2) · 6c3cd444
  Wai Yi Leung authored 9 years ago
  
  6c3cd444
Nov 24, 2015
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
Nov 19, 2015
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 02, 2015
- changes in gsnap piping and fix bug in fastqsync · 0a897753
  Sander van der Zeeuw authored 9 years ago
  
  0a897753
- Added sunburst plot to mapping and shiva · 89bc7d9a
  Peter van 't Hof authored 9 years ago
  
  89bc7d9a
Oct 30, 2015
- Adding Gears to summary output of Mapping · 72a96f7e
  Wai Yi Leung authored 9 years ago
  
  72a96f7e
Oct 16, 2015
- Style fix · c6ebdcae
  Peter van 't Hof authored 9 years ago
  
  c6ebdcae
Oct 15, 2015
- Rename file · f8785ed4
  Peter van 't Hof authored 9 years ago
  
  f8785ed4
- Remove some test and optimize code · c0d8c129
  Peter van 't Hof authored 9 years ago
  
  c0d8c129
- Each aligner has his own class now · 08bcca4d
  Peter van 't Hof authored 9 years ago
  
  08bcca4d
Oct 13, 2015
- Remove some testing · df83160f
  Peter van 't Hof authored 9 years ago
  
  df83160f
Oct 12, 2015
- Added a thread correction var · f03c70ff
  Peter van 't Hof authored 9 years ago
  
  f03c70ff
- Fixed zipped input files · cb2f2556
  Peter van 't Hof authored 9 years ago
  
  cb2f2556
- Fixed numberChunks in summary · 6f39a8ed
  Peter van 't Hof authored 9 years ago
  
  6f39a8ed
Oct 09, 2015
- Fix chunking · f4f1f4cb
  Peter van 't Hof authored 9 years ago
  
  f4f1f4cb